XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TGAATTGCCAATGTGCTAGTCATGCAATATTGGTGTCAGAAAACATAGAA
TGTGTTAAACTTTGAATTAAACCAGCAGTATATAGCACGGGCACGAAGGC
AGGTTAATGTCCATATTCTCCTAATAGACTGACTTGGAACCTTGTAATTC
ACCTGGCAAGAATCCTAGGCAGACAGTGCTTAGGACAGCCACAGTCCTCC
TGCGAGCTCCATTCTAACACCCAAATTCTGGAAAGTAGCACCTCAGAGAT
GGGCAACAGCTGATTATTACCAAGCTTTCTAGGAAACACACTTAGGAACA
CAGAAACTGAAGACAAACAGTAGGCATAAAGTTCCAGTATTATTAATTTT
TATATTACAAGATATTAAATTTGTAATCATTTTAATAAATGCACCAAATT
ATATAAGGATATCATATCCAAATCTCAGCTTATCTTCAAGCTTCAAAGTG
ATGTACGTCTGCTCTGGTATCCTTACATCATTCACAAAGGTCTACGAGGA
AAGAGACAAAGGTTACTCTGCATAGCACATTCCAGTCAAATTCACCAACC
TACTACTAAAGTACGTATTGTGAACTGCATCCTAACCTGTCAAGCATCCT
ACAACATGACACTTACTTCATACTAAACCTTTTGTCAATATTGCTGGTAA
CACAAAGAGTACAATGAGANCCAGNTGAATTTTGGCATTTGTAATTTGTC
TTAAAAA

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCCTGATCAGCAGAGGCTGATCTTTGCTGGT
AAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGA
GTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTGCTAAGAGAAGGA
AGAAGTCTTACACCACTCCCAAGAAGAACAAAGCATAAGAGGAAGAAGGT
TAAGTTGGCTGTGCTGAAACACTATAAGGTGGATGAAAATGGCAAAATTA
GCCGACTTCGTCGAGAGTGTCCTTCTGATGAATGTGGTGCTGGAGTTTTC
ATGGGAAGCCACTTTGACAGGCATTACTGTGGCAAGTGTTGTCTGACTTA
CTGCTTCAACAAACCAGAAGACAAGTAGTTGTGTATGCGTTAATAAAAAG
AAGGAACTCGTAAAAAAAAAAAAAAAAAGAAAGTGTGATCAATATACATT
TCCACTTTCTCCTAAGTATATAAATGGAGACAGAGAAGGCACAAGTCTTT
GAGGGATGGAGTAGAGATGGGAACTTAAAAGCCTTGACAGCATCTCCATG
AGAAAGCTGACAGCTGCTCAGTATGCAAGTCCCAGTCTACAGAAATCTAC
TTCCTGATGCTACAAAATACTTAGAATTTTTTTTGGGGGCAACTTCTTGA
TCAAAGTTTTAAAAAAGGCTTATTCTTCTAAAAGGACACTTTTTTTTACT
CTTATTTAAAGGGCCCAGGAAAAGAACTCACCCCTT

Query= MSMg01no337_i14.b1 MSMg01no337_i14.b1 CHROMAT_FILE:
MSMg01no337_i14.b1 PHD_FILE: MSMg01no337_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:57 2005
         (649 letters)



>mm_chr1_178717998_178719046
          Length = 1049

 Score = 1181 bits (611), Expect = 0.0
 Identities = 639/649 (98%), Gaps = 2/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgctagtcatgcaatattggtgtcagaaaacatagaatgtgttaaactttgaattaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgctagtcatgcaatattggtgtcagaaaacatagaatgtgttaaactttgaattaaac 260

                                                                       
Query: 61  cagcagtatatagcacgggcacgaaggcaggttaatgtccatattctcctaatagactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcagtatatagcacgggcacgaaggcaggttaatgtccatattctcctaatagactga 320

                                                                       
Query: 121 cttggaaccttgtaattcacctggcaagaatcctaggcagacagtgcttaggacagccac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 cttggaaccttgtaattcacctggcaagaatcctaggcagacagtgcttaagacagccac 380

                                                                       
Query: 181 agtcctcctgcgagctccattctaacacccaaattctggaaagtagcacctcagagatgg 240
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 agtcctcctccgagctccattctaacacccaaattctggaaagtagcaccacagagatgg 440

                                                                       
Query: 241 gcaacagctgattattaccaagctttctaggaaacacacttaggaacacagaaactgaag 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaacagctgagtattaccaagctttctaggaaacacacttaggaacacagaaactgaag 500

                                                                       
Query: 301 acaaacagtaggcataaagttccagtattattaatttttatattacaagatattaaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaacagtaggcataaagttccagtattattaatttttatattacaagatattaaattt 560

                                                                       
Query: 361 gtaatcattttaataaatgcaccaaattatataaggatatcatatccaaatctcagctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaatcattttaataaatgcaccaaattatataaggatatcatatccaaatctcagctta 620

                                                                       
Query: 421 tcttcaagcttcaaagtgatgtacgtctgctctggtatccttacatcattcacaaaggtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttcaagcttcaaagtgatgtacgtctgctctggtatccttacatcattcacaaaggtc 680

                                                                       
Query: 481 tacgaggaaagagacaaaggttactctgcatagcacattccagtcaaattcaccaaccta 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 tacgaggaaagagacaaaggttactctgcatagcacattccagtcaaattcagcaaccta 740

                                                                       
Query: 541 ctactaaagtacgtattgtgaactgcatcctaacctgtcaagcatcctacaacatgacac 600
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 ctactaaagtacgtattgtgaactgcatcctaacctgtcaagcgtcctacaacatgacac 800

                                                            
Query: 601 ttacttcatactaaaccttttgtcaatattgctggtaacacaaagagta 649
           |||||||||||||| ||||||||||||||||||||| |||||  |||||
Sbjct: 801 ttacttcatactaacccttttgtcaatattgctggtcacaca--gagta 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)