Query= MSMg01no338_a11.b1 MSMg01no338_a11.b1 CHROMAT_FILE:
MSMg01no338_a11.b1 PHD_FILE: MSMg01no338_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:34 2005
(515 letters)
>mm_chr1_137930015_137930930
Length = 916
Score = 615 bits (318), Expect = e-180
Identities = 383/416 (92%), Gaps = 19/416 (4%)
Strand = Plus / Minus
Query: 1 tgagggccttgcctggtcatctgaagacctcaatagtgtgactagccagaaagctttggc 60
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 493 tgagggccttgcctggtcatctgaagacctcaatggtgtgcctagccagaaagctttggt 434
Query: 61 gtctttaagagtcaggagcatcttctggggcccaagcaattccagcagagctggctcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtctttaagagtcaggagcatcttctggggcccaagcaattccagcagagctggctcaag 374
Query: 121 tctaggtctcaccctaaccacccctaagtctcaggagaaggactgaatattggcttcaag 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tctaggtctcaccctaaccattcctaagtctcaggagaaggactgaatattggcttcaag 314
Query: 181 acctcatgtacaccggccaagacttcaagagctatgta-ccaaatgcacagggcaggtac 239
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 313 acctcatgtacaccggccaagacttcaagagctatgtacccaaatgcacagggcagttac 254
Query: 240 tcatctgctcactttctctctctgtcctactgctcaggggacaagaagaaggg------- 292
||| |||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcaactgcacacctcctctctctgtcctactgctcaggggacaagaagaagggcgcgcgc 194
Query: 293 -----------cacacacacacacacacacacacacacacacacagagagagagagagag 341
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gcgcacacacacacacacacacacacacacacacacacacacacagagagagagagagag 134
Query: 342 agagagagagagagagagagagagagagagagagagagagagattgcttttcctga 397
|||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 133 agagagagagagagagagagagagagagagagagagcgattgattgcttctcctga 78
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 129
Number of extensions: 55
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_a11.g1 MSMg01no338_a11.g1 CHROMAT_FILE:
MSMg01no338_a11.g1 PHD_FILE: MSMg01no338_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:34 2005
(561 letters)
>mm_chr1_137760800_137761760
Length = 961
Score = 1004 bits (519), Expect = 0.0
Identities = 549/561 (97%), Gaps = 4/561 (0%)
Strand = Plus / Plus
Query: 1 atgaagtctggggaatcccatttctaaatagcaacatctatcacacgttttgttttttcc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 atgaagtctgggtaatcccatttctaaatagcaacatctatcacacgttttgtcttttcc 260
Query: 61 tctccattagcttctataaaggctgccaatgaaggctgaaggagcttgatggtgtcctca 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctccattagcttctatggaggctgccaatgaaggctgaaggagcttgatggtgtcctca 320
Query: 121 aaagcgaccctcagtgactgaaggtgtcactcagctgcagaggctttacccagcatgcaa 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 aaagcgaccctcagtgactgaaggtgtcactcagcggcagaggctttacccagcatgcaa 380
Query: 181 gaggcctgggttctatcctgagcttcacaagaggggagggagggaggcaaggcgtgattg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 gaggcctgggttctatcctgagcttcacaagaggggagggagggaggcaaggggtgattg 440
Query: 241 attaattaattgattggttgattgagtgaatgagtgaaggagggagggagagagattttc 300
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 attaattaattgattggttgattgagtgaatgagtgaaggagggag----agagattttc 496
Query: 301 acatgaatttctaaggaatggggtcctggacctacccccacttgttggttctggccctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acatgaatttctaaggaatggggtcctggacctacccccacttgttggttctggccctga 556
Query: 361 attgcattgcacactagaaatggatgctccaaacctcagctttcccagccccacttgata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 attgcattgcacactagaaatggatgctccaaacctcagctttcccagccccacttgata 616
Query: 421 cctgtagatcaaatcttttgcatcttcctttattcaatgctccagatcttaagagaaagg 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cctgtagatcgaatcttttgcatcttcctttattcaatgctccagatcttaagagaaagg 676
Query: 481 atgtcagcttgaggtttgctcagagaaggtgaccgtgacaacgaggaacatggaccacaa 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atgtcagcttgaggtttactcagagaaggtgaccgtgacaacgaggaacatggaccacaa 736
Query: 541 ctttaagggatggctgaactc 561
|||||||||||||||||||||
Sbjct: 737 ctttaagggatggctgaactc 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
