BAC Information

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BAC

Clone NameMSMg01-338C13
Chromosome1 (Build37)
Map Location 179,806,256 - 179,932,293
singlet/doubletdoublet
Overlap geneEG631584, EG545391
Upstream geneSdccag8, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss
Downstream geneLOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338C13.T7 (MSMg01no338_c13.b1)MSMg01-338C13.TJ (MSMg01no338_c13.g1)
ACCAG452760AG452761
length737725
length of high quality
(start - end)		552 (21 - 572)570 (71 - 640)
definitionCHROMAT_FILE: MSMg01no338_c13.b1 PHD_FILE: MSMg01no338_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:44 2005CHROMAT_FILE: MSMg01no338_c13.g1 PHD_FILE: MSMg01no338_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(179,806,256 - 179,806,800)(179,931,724 - 179,932,293)
sequence
GACTCCTATAGGTTCAGGACCGCGGAATCACTTTATTCTATCCAAATTCA
GTATTTCTGTGAATGTCTATATGCAGTTTCTTTCCTTTTCTTTTTTCTTT
TTTTTCCGGTGACTATACACATTTACAAAACATTTCTCCCTATATCTCTT
TCACGGCTTCCAAACTTTAATATTATTTCTATACTCAGTTTCCCTAAAGT
CTATCATCCTGTGAATGCCGGCTCTGAGCCTACATTACTTACTTGTTCTG
AGGTCTGGAACTTCAGCTTCTCACTAGTGGAATCTTTAGGTCACTATGAG
CTCTGGGCCTCAGCTTTTAGCCACAGGGCAGCACACTGCTCCGGGGAAGT
GAGTGGGCCACTGAAGTGAGGGTCCAGTCTGCCCACCACTTGCCACTCCC
AGAGCAGACCACTGCCTCCAGAAACCCTTGCTGCCTGCCCTGCCCCACAC
CCCTCCACCGAGACCACCACTGGCTGCTGCTTCAGTGCCTGGAGTCTCAC
TCTCATGACTGGAACCTGTTGGTTTGAAAGCCTGGCACATTTTAGAATTC
CCATGGAAGAGGTCAGCTCAGCCTTTAGAAGATTCCACGGNCCACCCACC
CCCACACACCCTGGTAGAGACAGGTCAGAGAGCACCTATGCCAGAAAGGA
GAGGCTGAGTAAGCTTCTACTACCTCATTTCCTAAGACAAGTTAAAAGGG
GGGACTGTTCTACCAACCATAATGGATTGGACCACGT

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGGATAGAGGAAGGCGAGGTGAGGCAGCA
CTGAAGATTTGTGGGGAAATGTGATGAGATGGACACATGGCACCTGAGCA
CAGGTAACCAGACACATGGTAGAATGTAAATCAGAATAAATGGGTTAGTC
TAAGTTATGATCTAGTCAGAGAAGAGCCTAGCTATATGGACATGGTATCA
GTAAATATATTTTGAGTCTGAATCTTAATTCTGGGACCATGGGCCTGGGA
GGTAGAACCAGACCTAACTTCTATATAAAACATCTTAATATTTTTCTGCC
TTCCCATCTGTTTGATGATCTATTTCACATCTACCCTGCATATAAATTGC
CATTGGAATATGTCCACTCCTAAACTTTTAAGTCAGACACGATAAGAAAC
TGGAGGCAAAGGCTAATGCTTTAGAAGTAGTAGTTTTAGCAATGGGACAG
GATATAGGAAATATTAAAATTAGGTTAGCTACTAAATGTCATGCTTCATT
TCAATATTTTTGTGTTATGCCATTACTTTATAATGCAACCATTGATTGGG
AAAAGACTAAGGCTCATTTGCAGGGAGTGTGGAAAGATACAGATATTTCA
CATTATATGGAGCATTTGAAGGCAGAAATTTCAGATATTAGAAGAAGTCA
TTTGGATACTTGGAACATTGATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_c13.b1 MSMg01no338_c13.b1 CHROMAT_FILE:
MSMg01no338_c13.b1 PHD_FILE: MSMg01no338_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:44 2005
         (552 letters)



>mm_chr1_179806049_179807000
          Length = 952

 Score = 1015 bits (525), Expect = 0.0
 Identities = 540/545 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   tcactttattctatccaaattcagtatttctgtgaatgtctatatgcagtttctttcctt 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tcactttattctatccaaattcagtatttctgtgaatgtctatatgcagtttctttcctt 267

                                                                       
Query: 68  ttcttttttcttttttttccggtgactatacacatttacaaaacatttctccctatatct 127
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttctttttttttttttttccggtgactatacacatttacaaaacatttctccctatatct 327

                                                                       
Query: 128 ctttcacggcttccaaactttaatattatttctatactcagtttccctaaagtctatcat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctttcacggcttccaaactttaatattatttctatactcagtttccctaaagtctatcat 387

                                                                       
Query: 188 cctgtgaatgccggctctgagcctacattacttacttgttctgaggtctggaacttcagc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctgtgaatgccggctctgagcctacattacttacttgttctgaggtctggaacttcagc 447

                                                                       
Query: 248 ttctcactagtggaatctttaggtcactatgagctctgggcctcagcttttagccacagg 307
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttctcacttgtggaatctttaggtcactatgagctctgggcctcagcttttagccacagg 507

                                                                       
Query: 308 gcagcacactgctccggggaagtgagtgggccactgaagtgagggtccagtctgcccacc 367
           |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct: 508 gcagcacactgctccggggaagtgagtgggccacaggagtgagggtccagtctgtccacc 567

                                                                       
Query: 368 acttgccactcccagagcagaccactgcctccagaaacccttgctgcctgccctgcccca 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 acttgccactcccagagcagaccactgcctccagaaacccttgctgcctgccctgcccca 627

                                                                       
Query: 428 cacccctccaccgagaccaccactggctgctgcttcagtgcctggagtctcactctcatg 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cacccctccaccgagaccaccactggctgctgcttcagtgcctggagtctcactctcatg 687

                                                                       
Query: 488 actggaacctgttggtttgaaagcctggcacattttagaattcccatggaagaggtcagc 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 actggaacctgttggtttgaaagcctggcacattttagaattcccatggaagaggtcagc 747

                
Query: 548 tcagc 552
           |||||
Sbjct: 748 tcagc 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no338_c13.g1 MSMg01no338_c13.g1 CHROMAT_FILE:
MSMg01no338_c13.g1 PHD_FILE: MSMg01no338_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:44 2005
         (570 letters)



>mm_chr1_179931469_179932438
          Length = 970

 Score = 1087 bits (562), Expect = 0.0
 Identities = 568/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggatagaggaaggcgaggtgaggcagcactgaagatttgtggggaaatgtgatgagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tgggatagaggaaggcgaggtgaggcagcactgaagatttgtggggaaatgtgatgagat 766

                                                                       
Query: 61  ggacacatggcacctgagcacaggtaaccagacacatggtagaatgtaaatcagaataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ggacacatggcacctgagcacaggtaaccagacacatggtagaatgtaaatcagaataaa 706

                                                                       
Query: 121 tgggttagtctaagttatgatctagtcagagaagagcctagctatatggacatggtatca 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tgggttaatctaagttatgatctagtcagagaagagcctagctatatggacatggtatca 646

                                                                       
Query: 181 gtaaatatattttgagtctgaatcttaattctgggaccatgggcctgggaggtagaacca 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gtaaatatattttgagtctgattcttaattctgggaccatgggcctgggaggtagaacca 586

                                                                       
Query: 241 gacctaacttctatataaaacatcttaatatttttctgccttcccatctgtttgatgatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gacctaacttctatataaaacatcttaatatttttctgccttcccatctgtttgatgatc 526

                                                                       
Query: 301 tatttcacatctaccctgcatataaattgccattggaatatgtccactcctaaactttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tatttcacatctaccctgcatataaattgccattggaatatgtccactcctaaactttta 466

                                                                       
Query: 361 agtcagacacgataagaaactggaggcaaaggctaatgctttagaagtagtagttttagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agtcagacacgataagaaactggaggcaaaggctaatgctttagaagtagtagttttagc 406

                                                                       
Query: 421 aatgggacaggatataggaaatattaaaattaggttagctactaaatgtcatgcttcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aatgggacaggatataggaaatattaaaattaggttagctactaaatgtcatgcttcatt 346

                                                                       
Query: 481 tcaatatttttgtgttatgccattactttataatgcaaccattgattgggaaaagactaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcaatatttttgtgttatgccattactttataatgcaaccattgattgggaaaagactaa 286

                                         
Query: 541 ggctcatttgcagggagtgtggaaagatac 570
           ||||||||||||||||||||||||||||||
Sbjct: 285 ggctcatttgcagggagtgtggaaagatac 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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