Query= MSMg01no338_h04.b1 MSMg01no338_h04.b1 CHROMAT_FILE:
MSMg01no338_h04.b1 PHD_FILE: MSMg01no338_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:05 2005
(585 letters)
>mm_chr1_74793611_74794592
Length = 982
Score = 1093 bits (565), Expect = 0.0
Identities = 579/585 (98%), Gaps = 3/585 (0%)
Strand = Plus / Minus
Query: 1 cttgacctcgggcctctccatcacacggacttaaacacagtctcaccttgtggcctctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 cttgacctcgggcctctccatcacacggacttaaacacagtctcaccttgtggcctctgc 723
Query: 61 ctccctaaacgagaggcaataactatgtgatgacccagggtcccagtgcagccaccttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ctccctaaacgagaggcaataactatgtgatgacccagggtcccagtgcagccaccttgg 663
Query: 121 gaagatggaacagagttgctgtcagctaggactctgagactctttaccatcccggtgccc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ---gatggaacagagttgctgtcagctaggactctgagactctttaccatcccggtgccc 606
Query: 181 cctgtgctgccaaaccctgaaagcgcagatagcatgctttggaagatgaagttactgtcg 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 605 cctgtgctgccaaaccctgaaagcccagatagcatgctttggaagatgaagttactgtcg 546
Query: 241 tccctgccttcttcccccaacaggtgcccagtccagaccagctgctgagtccaccaggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tccctgccttcttcccccaacaggtgcccagtccagaccagctgctgagtccaccaggca 486
Query: 301 ggaggccacattcccgaaggccacacccttggctcaagctgttcccttggctgaagcgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggaggccacattcccgaaggccacacccttggctcaagctgttcccttggctgaagcgga 426
Query: 361 gacctcccccacagggtgggacctgctcttgcccgactgtgcagcctcagcagggggctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gacctcccccacagggtgggacctgctcttgcccgactgtgcagcctcagcagggggctc 366
Query: 421 cagcacaggtgacctggagctgaccatagagttcccagccccagaggcctgggactgtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cagcacaggtgacctggagctgaccatagagttcccagccccagaggcctgggactgtga 306
Query: 481 gctggaaggcccggggaaggacaggcctcgtcctggtccatccccacaggccccacttct 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gctggaaggcctggggaaggacaggcctcgtcctggtccatccccacaggccccacttct 246
Query: 541 cggtctgagttgggatgacgaacttcagaagcccggagcccaggt 585
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cggcctgagttgggatgacgaacttcagaagcccggagcccaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 982
Length adjustment: 10
Effective length of query: 575
Effective length of database: 972
Effective search space: 558900
Effective search space used: 558900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_h04.g1 MSMg01no338_h04.g1 CHROMAT_FILE:
MSMg01no338_h04.g1 PHD_FILE: MSMg01no338_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:05 2005
(548 letters)
>mm_chr1_74641514_74642461
Length = 948
Score = 1060 bits (548), Expect = 0.0
Identities = 548/548 (100%)
Strand = Plus / Plus
Query: 1 agcagagacaagatgccatttctctttccttagagaaagcccggcttagagcagaaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagagacaagatgccatttctctttccttagagaaagcccggcttagagcagaaggaa 260
Query: 61 gtcccttaccatgggttgttggggttcaggggctgctttcagcgaggcaagatcatacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcccttaccatgggttgttggggttcaggggctgctttcagcgaggcaagatcatacac 320
Query: 121 aaggggctccctgcacacaggacactgcacaccgactgccttctaaaacaagaggagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggggctccctgcacacaggacactgcacaccgactgccttctaaaacaagaggagaaa 380
Query: 181 tcacatcctgctccctgtcagccagcccagtctttggagggctggggtcaaagggcacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacatcctgctccctgtcagccagcccagtctttggagggctggggtcaaagggcacaa 440
Query: 241 gcgttagctgatgctcagcaatgtggcagaacaaaggaggaaagagctgcctaaggagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcgttagctgatgctcagcaatgtggcagaacaaaggaggaaagagctgcctaaggagag 500
Query: 301 gcgtggaaatgctgcaaagctgcatgcaatatatatgtcactatacacatggatgccgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcgtggaaatgctgcaaagctgcatgcaatatatatgtcactatacacatggatgccgtt 560
Query: 361 cttcctggacaggggtaagaatctcaaagggtaagaatctcgaactaaaacgatgaaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcctggacaggggtaagaatctcaaagggtaagaatctcgaactaaaacgatgaaagg 620
Query: 421 ccaccagactggagggatggagatgaaagtctagggggaccaggagagacagtgggtctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaccagactggagggatggagatgaaagtctagggggaccaggagagacagtgggtctg 680
Query: 481 gtgatgtctacctgcttggtgacaacgtgctgtcgctcctgttcctgttcctgtgtagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgatgtctacctgcttggtgacaacgtgctgtcgctcctgttcctgttcctgtgtagtc 740
Query: 541 agctcttg 548
||||||||
Sbjct: 741 agctcttg 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
