ACTCCTATAGGGTCCGGATCCGCGGAATTCACAGAGGTCCTCCCGGCTCT
GCCTCTCAAATGCTGGGACTAAAGGTGTTGCACCAACGTGCCCAGGAAAA
AAAATAGATCTATAAATAAGAATAAATGATAGATTTTGTTCAGAATAGTT
TTATTATATAGCCCCATTGCATTCTAAGTACTTGAAATATTAAAATCTAT
TATAATAAAAATACTGCAAAGGACTCTAAAGGCCAGTTTCAATCACATCC
TTTACATGAAATGCTTCATTATTCCTTGGATGGACGTGGTCACATGGTTT
TATTTTCACATCTGCCCATTATATAGCATCCAGTCACAAAGTGCTCATGA
GGCAGGAGACACCAAGGATCTAGAAATGGGCAACACAGACACTTGCTTTG
TTTTCGTAGAGCCTAAAACCTAATGGTGACTTTTTTCTTCCTCTTTGAGA
TAAGAGTCTCACTATATCTCAGATCCACTTAGAACTCACTGTAGATACCA
GGATAGGATCTCACTTGTAAACCCCTGCTTCCATCTACTTTGTGCTAGTT
TCCCAGGCATGTCATACCACACGTACACTTAAGGTCAGAGTTTGAAATTA
CTGTGTTAAGTACATTATGTTGAGGGGAGGGGAGTGCATGCCGTGACACA
TGGGTAGAAGACAACTTTGTAGACTTGGNTTTCTCTGTCTATCTTTCTGT
GGATTCCAGGGATGAAACTCAGGCGTTAGTC

GGGTAAGCCTGNCNNCCGCCTGGCCTTCCACTTTANGTGACCTATANAAG
GATTCGCGNAATTCTTCGGTCTAGGACATGCTATCTTGTTTTGAGGTTTC
TANAATTTGTATGTANCAAAGGTTCTCAAGTTTCANGGTTAACATTCTTT
TCCCANANANACTTGTNAAAGGGGCCCAAAAAGGTCCCNNNNNANANNNN
NNNNNNNCCAAAAACNNNCCCCTTTAAACTTTCCNNNTTTNTAAGAGTGT
AGAGGGCCGGGGCTGGCGGGGAGAAGAGGAGGGGGGAGGGGCAGGGGGGG
AGGGGAAGGAAAGAGAGGCGAGGAGAGGGCGAAGGAGGGGGGGAAGAAAG
AAGAGGAGGGCGAAGAGAGGCGGGGGGGGCTACTATATNNNNNCCCCCCA
ANCTATCTATTCTACAGAGACCCCCTNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTGCGGGGGGGGGGGGGNNTCTANNNNNNNNNNTNNAAAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAATTTTTTTNNNNNNN
NNNNNNNNANTTTTTTTNNTNNNNNNNNNNNNNTNNTTNNNTTTTTTNNN
NTNNNNNNTNTTTTTNNTTNNNNNNNNNNNNNNNTTTNTTTTTTTTNNNN
TTTNNNTTTNNNNNNNNNNNNNNNNTTNNNTTNTTNNNTTNNNNNNNTTT
TNNNNNTNNNTTTTTNTTNNTTNTTTNNTNNTTTTTTNNTTATTTTTTTT
TTTTTTTTTTTTTTTTT

Query= MSMg01no338_i09.b1 MSMg01no338_i09.b1 CHROMAT_FILE:
MSMg01no338_i09.b1 PHD_FILE: MSMg01no338_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:10 2005
         (635 letters)



>mm_chr1_157203677_157204711
          Length = 1035

 Score = 1203 bits (622), Expect = 0.0
 Identities = 628/630 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacagaggtcctcccggctctgcctctcaaatgctgggactaaaggtgttgcacc 65
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gaattcacagaggtccacctggctctgcctctcaaatgctgggactaaaggtgttgcacc 743

                                                                       
Query: 66  aacgtgcccaggaaaaaaaatagatctataaataagaataaatgatagattttgttcaga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aacgtgcccaggaaaaaaaatagatctataaataagaataaatgatagattttgttcaga 683

                                                                       
Query: 126 atagttttattatatagccccattgcattctaagtacttgaaatattaaaatctattata 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atagttttattatatagccccattgcattctaagtacttgaaatattaaaatctattata 623

                                                                       
Query: 186 ataaaaatactgcaaaggactctaaaggccagtttcaatcacatcctttacatgaaatgc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ataaaaatactgcaaaggactctaaaggccagtttcaatcacatcctttacatgaaatgc 563

                                                                       
Query: 246 ttcattattccttggatggacgtggtcacatggttttattttcacatctgcccattatat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttcattattccttggatggacgtggtcacatggttttattttcacatctgcccattatat 503

                                                                       
Query: 306 agcatccagtcacaaagtgctcatgaggcaggagacaccaaggatctagaaatgggcaac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agcatccagtcacaaagtgctcatgaggcaggagacaccaaggatctagaaatgggcaac 443

                                                                       
Query: 366 acagacacttgctttgttttcgtagagcctaaaacctaatggtgacttttttcttcctct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acagacacttgctttgttttcgtagagcctaaaacctaatggtgacttttttcttcctct 383

                                                                       
Query: 426 ttgagataagagtctcactatatctcagatccacttagaactcactgtagataccaggat 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttgagataagagtctcactatatctcagatccacttagaactcactgtagataccaggat 323

                                                                       
Query: 486 aggatctcacttgtaaacccctgcttccatctactttgtgctagtttcccaggcatgtca 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aggatctcacttgtaaacccctgcttccatctactttgtgctagtttcccaggcatgtca 263

                                                                       
Query: 546 taccacacgtacacttaaggtcagagtttgaaattactgtgttaagtacattatgttgag 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taccacacgtacacttaaggtcagagtttgaaattactgtgttaagtacattatgttgag 203

                                         
Query: 606 gggaggggagtgcatgccgtgacacatggg 635
           ||||||||||||||||||||||||||||||
Sbjct: 202 gggaggggagtgcatgccgtgacacatggg 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)