TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATAACAGTTGCTGAGATGTGGCATACTTTCAACACTGAAAATCTTTTTA
GTTAGTTTTGAGGAAAAGCTAATTTAGTTAAGATTGATTTGGAAAATACA
CATTTCTCAAAAGCTCTGAGACAGCTTGGAAGAGTCTTCAAGCCTGGGGA
AGGTGAAGTCTCATTAAGGTTGCATGCAATGTTGCTTTCCCTTCAATTCA
ATGTTTCTCTAGTTACTAGTTTTTCTTCATCAGAAAAGATTAAAACAAAT
TCTGGTTTTGATTTTGGTTCATTAACAAAACTCAATGTATGGAAAGAAGA
AGATGAAATGGAACTATTGAGAACAACTTCTTTGGTATTGAAAATAATTC
ATAGCTTTTGAACAAACTTTCACTATGTAGCTTTTGCTGGCCTTGAATTC
ACAAAGACCCACATACTTCTGACTTTACAAAGCTAGGATTAAAGGTGTGT
GCTACTATGATACCCCTCACAAGCAGAATTTAAGGTAATTATAATACACA
GGCAGGGAAAGGGATAGAAAGGAGCAACAAGAAAAGAACTGATAGTCTGC
CCTGGCATCACGTTGGAAGTCCTGATGTTTCCTGAGACCATATCTCTAGA
TGATAAAATGACCCAACTAGAAAGCACAAGTCACAGCCCACTCAAGAGAG
AACCAACTCTTGCAACTTGGTATCTGACTTCACATATATTCTCATGTG

NCCATGCTGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGTCCTGACTGTACTAACTGAGATTTT
AATTCAATGAAGAAAGAAATAAAGGAAAGAAGAAATGAAGGAAGGAAAGG
AGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGGAAGGCCCAGGAAG
ACTGTACCTTGAAGGAGTTTTAGCACAAGGTCCTAACAAATGGTACCAAA
CTGTCTCTGAGGTTACCTACTATTGTTTACCATCATTTTTAGCAAGACAC
TTACAATCCTATATCATTTTTATGCTTCCAGCCAACATTTCGGTTAACAC
CATCTACTTTTTCTTATCTCACCCCCCCCCTCCCAAGACCCTGATCTTCT
TCCCCGCCCCCCCCGCCTCATATCTCCCCCCCACACTCCTTCCCCTCCTT
CCAATTCTCCCGCTCCCCGCACTCCCCTCCCTCCTTTCTCTTTGCTCCCC
CCCTCTTCCCTCTCCTCGCCTTTCTGTTCCCCCCCCGCCTCCCCACCTTT
ATGTCCGTCCTCCCCCTCCGTGCTCCCCCCCCTTCCCTCTCTCCCCCCTT
CCTCTCCCCTTCTCTATTCTCATACTCTCCTCTTCCTCTCCCTCCCCCCC
CCTCCCTCCTTCTCCTCTCCCCCCCCCCCCCTTCTTCCCCTCCTCCTTCC
CT

Query= MSMg01no338_k24.b1 MSMg01no338_k24.b1 CHROMAT_FILE:
MSMg01no338_k24.b1 PHD_FILE: MSMg01no338_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:23 2005
         (644 letters)



>mm_chr1_126797503_126798546
          Length = 1044

 Score = 1083 bits (560), Expect = 0.0
 Identities = 563/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataacagttgctgagatgtggcatactttcaacactgaaaatctttttagttag 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattcataacagtggctgagatgtggcatactttcaacactgaaaatctttttagttag 505

                                                                       
Query: 65  ttttgaggaaaagctaatttagttaagattgatttggaaaatacacatttctcaaaagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttgaggaaaagctaatttagttaagattgatttggaaaatacacatttctcaaaagct 445

                                                                       
Query: 125 ctgagacagcttggaagagtcttcaagcctggggaaggtgaagtctcattaaggttgcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgagacagcttggaagagtcttcaagcctggggaaggtgaagtctcattaaggttgcat 385

                                                                       
Query: 185 gcaatgttgctttcccttcaattcaatgtttctctagttactagtttttcttcatcagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcaatgttgctttcccttcaattcaatgtttctctagttactagtttttcttcatcagaa 325

                                                                       
Query: 245 aagattaaaacaaattctggttttgattttggttcattaacaaaactcaatgtatggaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagattaaaacaaattctggttttgattttggttcattaacaaaactcaatgtatggaaa 265

                                                                       
Query: 305 gaagaagatgaaatggaactattgagaacaacttctttggtattgaaaataattcatagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaagaagatgaaatggaactattgagaacaacttctttggtattgaaaataattcatagc 205

                                                                       
Query: 365 ttttgaacaaactttcactatgtagcttttgctggccttgaattcacaaagacccacata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttttgaacaaactttcactatgtagcttttgctggccttgaattcacaaagacccacata 145

                                                                       
Query: 425 cttctgactttacaaagctaggattaaaggtgtgtgctactatgatacccctcacaagca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 cttctgactttacaaagctaggattaaaggtgtgtgctactatgatacccctcacaagca 85

                                                                       
Query: 485 gaatttaaggtaattataatacacaggcagggaaagggatagaaaggagcaacaagaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  gaatttaaggtaattataatacacaggcagggaaagggatagaaaggagcaacaagaaaa 25

                                   
Query: 545 gaactgatagtctgccctggcatc 568
           ||||||||||||||||||||||||
Sbjct: 24  gaactgatagtctgccctggcatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)