XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGCTTAGTTGATTAATATAAGGCTAGTTTAGTGAAGTACAACTTGGC
AAAGCCGGAAGCTAAAAAAAATAGCCACTCAAATTTTAGCAGTCTTAAAG
CCGTTTGATAATTTATTCAGTCGAGGTTAAAAAAAAATATTGGTGCTAAC
CAAAACATTTAACAAATAATAGGGGAAATCAAGTTGGGGAAAAAATAACT
AAATTGAAATCTACTACTCTGGCGTGCTTTGGGTTCCTTTTCATTTATTA
GGATTAGGTGGTTAGAATTGCTTTTAGAAATCAAATCTTCCCCTTATCTC
TCCTCTGTGGTTCTGGATCTGCACAGGTGAATCCCATACTGTTAGCCTGC
TCTAGAAGGCTGTCTTACCATTTGGATGGCGATGTGACAAACCAACCATC
AAATATCACCAAGCAGCAGAGAAAGGAGAGAGCCCCAGGAGCCACCGCAG
AGGACCATATTGCCCACCAGTTAGGAGTAAGATGAGAGCCAAGCGACCCA
GCAGCTCAATCGAGGAAGAGTTAGATGAAACCCGGTGTAGACACTGGCTT
TCCTGTAAGGGTGTGGTGGCTTTGGATAAGCAAAGAAAGGGCATTTTGGG
GATGAAATCAAAAGGCAACTCTGGGGAGTAAAGGCAAAGGGCCTGCAAAG
TATTCTTGGTTTTTGTCAACTGAATGTCCCCCAATCGCTTGCTCCCTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGGGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCTACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAG
TGGATATTAGCCCCCAACCCTAGGATACCCAGAAATAAGAAAAAATTTTG
CTAAACACCTGAACTTCCCAAAAAAGGAAAAAGGAAGAGTGGA

Query= MSMg01no338_n21.b1 MSMg01no338_n21.b1 CHROMAT_FILE:
MSMg01no338_n21.b1 PHD_FILE: MSMg01no338_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:35 2005
         (565 letters)



>mm_chr1_62671253_62672217
          Length = 965

 Score = 1004 bits (519), Expect = 0.0
 Identities = 552/563 (98%), Gaps = 2/563 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgcttagttgattaatataaggctagtttagtgaagtacaacttggcaaag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ggaattctctgcttagttgattaatataaggctagtttagtgaagtacaacttggcaaag 706

                                                                       
Query: 64  ccggaagctaaaaaaaatagccactcaaattttagcagtcttaaagccgtttgataattt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ccggaagctaaaaaaaatagccactcaaattttagcagtcttaaagccgtttgataattt 646

                                                                       
Query: 124 attcagtcgaggttaaaaaaaaatattggtgctaaccaaaacatttaacaaataataggg 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 attcagtcgaggtt-aaaaaaaatattggtgctaaccaaaacatttaacaaataataggg 587

                                                                       
Query: 184 gaaatcaagttgggg-aaaaaataactaaattgaaatctactactctggcgtgctttggg 242
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 586 gaaatcaagttggggaaaaaaataactaaattgaaatctactactctggcgtgcttcggg 527

                                                                       
Query: 243 ttccttttcatttattaggattaggtggttagaattgcttttagaaatcaaatcttcccc 302
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 526 ttccttttcacttattaggattaggtggttagaagtgcttttagaaatcaaatcttcccc 467

                                                                       
Query: 303 ttatctctcctctgtggttctggatctgcacaggtgaatcccatactgttagcctgctct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttatctctcctctgtggttctggatctgcacaggtgaatcccatactgttagcctgctct 407

                                                                       
Query: 363 agaaggctgtcttaccatttggatggcgatgtgacaaaccaaccatcaaatatcaccaag 422
           | |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaaaggctattttaccatttggatggcgatgtgacaaaccaaccatcaaatatcaccaag 347

                                                                       
Query: 423 cagcagagaaaggagagagccccaggagccaccgcagaggaccatattgcccaccagtta 482
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 346 cagcagagaaaggagagagccccaggagccaccacagaggaccatattgcccaccagtca 287

                                                                       
Query: 483 ggagtaagatgagagccaagcgacccagcagctcaatcgaggaagagttagatgaaaccc 542
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 286 ggagtaagatgagagccaagcggcccagcagctcaatcgaggaagagttagatgaaaccc 227

                                  
Query: 543 ggtgtagacactggctttcctgt 565
           |||||||||||||||||||||||
Sbjct: 226 ggtgtagacactggctttcctgt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)