TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAAATCCGCGGAA
TTCACCTTATTTCCCTGAATGAAGGAGAAACCTCATAGCTGTTTGCTTTT
AAATTTTTCTATGCTCTCCTTTATAATCTACAGGCAGATATATATAATGA
AGCAATTTTGTAGGTTTGAAGAATATGAAATGACAGTTGGCACTGTGCAT
TTTTTCATGTTGTGTTTTATCCTTACAGTTTTAGCACATATAAAAATAGT
ATGTTAAACAATAGATCACAGATAAGTAAATTAAAATGCAGAGGGAATTC
AAGTTTAGATAGACAATATTTATTTTTACCACACATAAAAAAGGAAATGA
GGTCATAGAGGAAGATGCTGGGAGTATAGGTGCATTAAAGAGTGCTTGCC
TAATATGGACAAGACACTGAGACTGACACACAGCACAACTAATTCAAAAC
CAACACGGCTGGCTGCAATAAGATTACTGTAGTAGCTGAGAAGATTTTAT
TTGTAATTGTAAAATAAATTTATTTCTAAGTATAAGTCTGTGAAAGGACT
GATTCACAAATGGCAAGGATTATTTTTATTTTCTGTGCATGTGTCATATA
AATAAAACTTAAGTGATTGCAGTGCTGTTATCTTAGAAAATACTTTAAGA
GCTTGGTCATCTGCAATTATATTATTAGTGTAACAAAATCCCGCTGTAGA
AATTCAAAAGAATGGATGATTCCAAACCCAGTAATGGAGACC

CTATAATAATAATTNCATACTTATCTACAATANNNNNNNNNNTNNNNNNN
NNNCCCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAATCTTTCCAAG
AACTTNNTTATCATGAATGGGGTGGTTGGATCTTCGTCAAATGCTTTTTT
CTGCATCTAACGAAGATGAATCATGAAGTTTTTGGTCTTTTGAGTTTTGT
TTTATATAATGGAATTNNACTTTGATGGAATTTTTCCNTATAATAAAAAC
CATTCCCCAGCAATCCCCTGGAAATAAAACCCTACCTTGGTCCAGGAAAG
GAAAGGAATTGGCCTTTTAAAAGGGGGTTTCCTTTGGGGAAATTTGGGGG
TTTAAACCAAAAAGAAATTTTTTTTATTTTAAAGGGAATTTTTTTTTGGC
CCCTCCCGCCAATTTTTTTCCAAAAAAAAAAAAAATTGGGGGGCGCCCCA
AAAAAGAACCCCCCCCCAAAACCTCTTGTGGGGGGGGGGAGGAAATATTT
TTTTCTCTTGGGGGGGGGGATATAAAAAAAAAAAACA

Query= MSMg01no339_a17.b1 MSMg01no339_a17.b1 CHROMAT_FILE:
MSMg01no339_a17.b1 PHD_FILE: MSMg01no339_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:48 2005
         (550 letters)



>mm_chr1_149383020_149383970
          Length = 951

 Score =  984 bits (509), Expect = 0.0
 Identities = 536/545 (98%), Gaps = 1/545 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   agaaacctcatagctgtttgcttttaaa-tttttctatgctctcctttataatctacagg 65
           |||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 751 agaatcctcatagttgtttgcttttaaattttttctatgccctcctttataatctacagg 692

                                                                       
Query: 66  cagatatatataatgaagcaattttgtaggtttgaagaatatgaaatgacagttggcact 125
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 691 cagatatatataatgaagcaattttgtaggtttaaagaatatgaaatgacagttggcgct 632

                                                                       
Query: 126 gtgcattttttcatgttgtgttttatccttacagttttagcacatataaaaatagtatgt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtgcattttttcatgttgtgttttatccttacagttttagcacatataaaaatagtatgt 572

                                                                       
Query: 186 taaacaatagatcacagataagtaaattaaaatgcagagggaattcaagtttagatagac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 taaacaatagatcacagataagtaaattaaaatgcagagggaattcaagtttagatagac 512

                                                                       
Query: 246 aatatttatttttaccacacataaaaaaggaaatgaggtcatagaggaagatgctgggag 305
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 511 aatatttatttttaccacacataaaaaaggaaatgatgtcatagaggaagatgctgggag 452

                                                                       
Query: 306 tataggtgcattaaagagtgcttgcctaatatggacaagacactgagactgacacacagc 365
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgtaggtgcattaaagagtgcttgcctaatatggacaagacactgagactgacacacagc 392

                                                                       
Query: 366 acaactaattcaaaaccaacacggctggctgcaataagattactgtagtagctgagaaga 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acaactaattcaaaaccaacacggctggctgcaataagattactgtagtagctgagaaga 332

                                                                       
Query: 426 ttttatttgtaattgtaaaataaatttatttctaagtataagtctgtgaaaggactgatt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 331 ttttatttgtaattgtaaaataaatttatttctaagtataagtctgtgaaaggactgatg 272

                                                                       
Query: 486 cacaaatggcaaggattatttttattttctgtgcatgtgtcatataaataaaacttaagt 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cacaaatggcaaggattatttttattttctgtgcatgtgtcatataaataaaacttaagt 212

                
Query: 546 gattg 550
           |||||
Sbjct: 211 gattg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space:   508140
Effective search space used:   508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)