NNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTTATTTGCGTGTTGTGTACGGTTGAGGCCAGTAAGC
CCCTGTCCCCTGAGTTAACAATACACCTTGAGGTCATATAATACTATGAC
TGCCATCCTACTGTGTACTTGGCCTGCTTGCTTAACTTGATTTAAGAGAA
CAAAAGAACACCCAACTTTATTTGCTTTGGATTTCCAATATAATCACCTT
TTACAACCTACACTAGTGCATAGCTGTAATCTTAAATTATGTACTGTTCC
ATGCCCCTGACCCAGAGAACAGTGTGTGTGTGTGTGTGTTTGTGTTATGA
TAATCATTTGTTGAAAACAGCAAATATGTCAAAAGAGACCTTATGCTACA
AATACTTGCCATAAATGTTGGAAACAGCATAGAGATATTGTTTGATACAC
GGTATGTTGGCAGTATTGTCTGTCACATGGCTCAGTTGAACTCTGTGATA
TTTTTGCTTATAAAACTTTGCTAAAGGTTTCTGTAAAGTATCTCTTATAC
CCCCTCCCTCCCCCGCTCCAGTGAGAGACATGAGCCAAACACTTAGACAT
TAGGCAGCATACATAAACACGTATCAGACAGACTAGGGACAAACCAGAAA
GTAGAAGCTACCTAAGACCAATGTATTTTTCCCTGCACAAAGAGGATTTT
CTTCTGGTGAAGTAAAGGTGAATGCATAGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTACGCTTAAAACCCATGCATTTTTTTAAGGCCAGCTCCCACC
ACAGAACTCTGTCCATGTGGTCTCCCATCCAATGATGCATGGCAAAGACT
GAGAAATCTTGGCCTAGAAGATGTAAAGCAGTTGGTGGAGGGCTCATTGT
AGCTCTCCCGCAAACTTCTCTCTGCCTTCTGATGTGGGCGGAAATGCTCT
CAGCTTGCTGCACTCCTCTAGCCTCTAGCTGGGTGGTGCAGCTGCAAAGC
ATGTGCTGTGAACCCTGTAAGCTCAAAAGGAGAGGCACGGATCCACAGCT
GTGGCAGGAGCCGAGGGGCATGGGAGACCAGAAGCTTGGTGGCCTTAGCA
GTAGCAACATGGGGTCTTCTGTGTCACTAGAGAGAGCCTTTATGATCCCC
AATGCAAAGGACCTTGGAGCCCCAGGTTCAGAGATGTTTATGTACAGCCT
CTCAGATGAAGTCAATGGCTTCCTCCCTGTTGCAGGCTGGGGTGAGAAGA
ACCCACACTCACAGGAAGCCAGCGGTTCCCCTTTTAACAATGCCTGCCCC
CAGCTCAGCCTTCTTACCCACCTTCATAACTCTTTGTACTAAACAGGGAA
GCTGAACTGCTTGCTGCAATCCCATCCCTTGTCTGGGACTTCCTCCTGGG
AA

Query= MSMg01no339_f01.g1 MSMg01no339_f01.g1 CHROMAT_FILE:
MSMg01no339_f01.g1 PHD_FILE: MSMg01no339_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:07 2005
         (577 letters)



>mm_chr1_140087978_140088954
          Length = 977

 Score = 1071 bits (554), Expect = 0.0
 Identities = 572/578 (98%), Gaps = 2/578 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacgcttaaaacccatgcattttttt-aaggccagctcccaccacagaactctgtccat 59
           |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 201 ttacgcctaaaacccatgcattttttttaaggccagctcccaccacagagctctgtccat 260

                                                                       
Query: 60  gtggtctcccatccaatgatgcatggcaaagactgagaaatcttggcctagaagatgtaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggtctcccatccaatgatgcatggcaaagactgagaaatcttggcctagaagatgtaa 320

                                                                       
Query: 120 agcagttggtggagggctcattgtagctctcccgcaaacttctctctgccttctgatgtg 179
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 agcagttggtggagggctcattgtagctctcc-gcaaacttctctctgccttctgatgtg 379

                                                                       
Query: 180 ggcggaaatgctctcagcttgctgcactcctctagcctctagctgggtggtgcagctgca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggcggaaatgctctcagcttgctgcactcctctagcctctagctgggtggtgcagctgca 439

                                                                       
Query: 240 aagcatgtgctgtgaaccctgtaagctcaaaaggagaggcacggatccacagctgtggca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagcatgtgctgtgaaccctgtaagctcaaaaggagaggcacggatccacagctgtggca 499

                                                                       
Query: 300 ggagccgaggggcatgggagaccagaagcttggtggccttagcagtagcaacatggggtc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggagccgaggggcatgggagaccagaagcttggtggccttagcagtagcaacatggggtc 559

                                                                       
Query: 360 ttctgtgtcactagagagagcctttatgatccccaatgcaaaggaccttggagccccagg 419
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 560 ttctgtgtcactagagagagcctttctgatccacaatgcaaaggaccttggagccccagg 619

                                                                       
Query: 420 ttcagagatgtttatgtacagcctctcagatgaagtcaatggcttcctccctgttgcagg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttcagagatgtttatgtacagcctctcagatgaagtcaatggcttcctccctgttgcagg 679

                                                                       
Query: 480 ctggggtgagaagaacccacactcacaggaagccagcggttccccttttaacaatgcctg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctggggtgagaagaacccacactcacaggaagccagcggttccccttttaacaatgcctg 739

                                                 
Query: 540 cccccagctcagccttcttacccaccttcataactctt 577
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cccccagctcagccttcttacccaccttcataactctt 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)