BAC Information

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BAC

Clone NameMSMg01-339G20
Chromosome1 (Build37)
Map Location 15,901,365 - 15,901,497
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpa1, EG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
Downstream geneLOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339G20.T7 (MSMg01no339_g20.b1)MSMg01-339G20.TJ (MSMg01no339_g20.g1)
ACCAG453715AG453716
length748779
length of high quality
(start - end)
405 (49 - 453)144 (69 - 212)
definitionCHROMAT_FILE: MSMg01no339_g20.b1 PHD_FILE: MSMg01no339_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:15 2005CHROMAT_FILE: MSMg01no339_g20.g1 PHD_FILE: MSMg01no339_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGCATGTTCTGATTTAGGATCTTTTTGCGTCTTGCATTTTC
TTTGATTGTTGTGTCCATGTTTTCTATGGAATCTTCTGCACCTGAGATTC
TCTCTTCCATCTCTTGTATTCCGTTGCTGATGCTTGCATCTATGGTTCCT
GATTTCTTTCCTAGGCTTTCTATCTCCAGAGTTGTCTCCCTTTGTGATTT
CTTTATTGTTTCTACTTCCATTTTTAGGTCCTGGGTGGTTTGTTCAATTC
TTTCATCCATTTTGTAGTGTTTTCCTGCAGCTCTTTAAGGAATTTTTGTG
TTTCCTCTTTAAGGGCTTCCAGCTGTTTACCTGTGTTTTCCTGTATTTCT
TGAAGGGAGTTATCTATTTCCTTCTTAAAGTCCTCCATCATCATCATGAT
AAGCGACTTTAGAACCATGTCTTCATTTTCAGGAGTGATGGTATATCCAG
GACTTGCTATGGTAGGAGAGTTTGTTTCTGAAGATGCCAAATAACCTTGG
TTTCTGTTGATTCTGTTCCTATGATTTGCCTTCTGTCATCTGATTATCTC
AATTGCTTACTTGCCCCAATAATTTTGATTGGAGCCTGGCCTTCCCATAT
CCGCTGTTTATTTCTTTATTTTTCCTAATTCTATTTTTTTTTCCTAATTT
TTAATTTTTATTTCCCCGCTTCCCGCACTTTCTTTTCCGCTGTTATTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGCAGAGATATGAGATGTGGGGCCGGAAAAG
ATAATGGGACAAGATTAACCTGCAAAATGCAGCCGGGCAGCCAACCAAGC
ACAAAGAGCAGCTGGGTTGAATGCAGGTACCAGAGATCTTGGTGGGGGGG
AGGGGGTGGNNNNNNNNNNNNNNNNTNNNNNNNNNNCNNNNNNNNNNNNN
NNNNNNNNNNNNNCNNNNNNNNNNNNNNNCGNNNCNNNNNNNNCNNCCCC
TCCCNNNCCCCCCTTTCCCATTTCTTTCTTCTCTTCTTTTCTTTTTTTCT
TTTTTCCTCCTCTTCTCCTCCTTCTTTTTATTACTTTCTATTTCACTCCT
GTTATCTTCCTTCTTCTCCTCGTTTACCTTTTTCCCTTCCTCTATCTTGG
TTTCCCGTTACGTTCCTTTTCTTTCTCCTTTGTCCCCCCCTTTTTTTATC
CCTTTTGTCGCCCTTCTTTCTCGTCTTTCCTCTTGATTTACCCCGTTTTG
CTTTCTTTGTTCCTTTTTTTTCCTCCGTCGCCATTTCTTTCTTTCCTTTC
CGTTTCTCTTTTACTTTTCTTTTTTTCCCCGTTTTTTTCTTTCCACCTCC
TTTTTTCTCTTTTTCCTGTCCTTGTATCTTCCCCTCCCCCTCTCACCTCT
CCTTTTTTTTCTTTCCATTTTTCTCTTCCTTCTCCAATTTTTACTTCCCC
GCCAGTGTTCCTTTCCTCCTCTCGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_g20.g1 MSMg01no339_g20.g1 CHROMAT_FILE:
MSMg01no339_g20.g1 PHD_FILE: MSMg01no339_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:15 2005
         (144 letters)



>mm_chr1_15901165_15901709
          Length = 545

 Score =  223 bits (115), Expect = 5e-63
 Identities = 128/133 (96%), Gaps = 2/133 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   agagatatgagatgtggggccggaaaagataatgggacaagattaacctgcaaaatgcag 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agagatatgagacgtggggccggaaaagataatgggacaagattaacctgcaaaatgcag 274

                                                                       
Query: 65  ccgggcagccaaccaagcacaaagagcagctgggttgaatgcaggtaccagagatcttgg 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccaggcagccaaccaagcacaaagagcagctgggttgaatgcaggtaccagagatcttgg 214

                        
Query: 125 tg--ggggggagg 135
            |  |||||||||
Sbjct: 213 ggagggggggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 545
Length adjustment: 8
Effective length of query: 136
Effective length of database: 537
Effective search space:    73032
Effective search space used:    73032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)