TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTTACTCTATGCCCCAATTTTTAATAGGGTTATTTGATT
TTCTGGAGCTCAGCTTTTTGAGTTCTTTGTATAGATTGGATATTAGTCCC
TTGTTGGATTTAGGATTGGTAAAGATCTTTTCTAAATCTGTTGGTGGCCT
TTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAGTTTTGCAATTTTA
TGAGTTCCCATTTGTCAATTCTTGGTCTTACAGCAAGAGTCATTGATACT
TTGTTCAGGAATTTTTCCTCTGTTCCCATATCTTTGAAGCTTTTCCCAAC
TTTCTTCTCTATAAGTTTCAGTGTCTCTGATTTTATGTGAAGTTCCTTGG
TCCACATAGACTTGAGCTTTGTGCAAGGAGACCAGAATGGATCAATTTGC
TTTCTTCTATATGATAACCATCACTTGAACCAGCACCATTTGTTGAAAAT
GCTGTCTTATTTCCCCTCGATGCCTTTAGCTCATTTGCCAAAATCAAGTG
ACAATAGGTATGTGGGTTCATTTCTGGGTCTTCAATTCTATTTAATGGAT
CTACCTGTTTGTTGCTGTACCAGTACCATGCAATTTTTTTTTGTTTGGTT
GTTTTTTGTTTTTTGTTTTTGTTTTTTTGCTCTTGCTTCTGGTCTTTTAG
TATCTAACCACAAAACCTTTGAATCCAAGTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTTGATGGATCCTGATGAACATGCAGTGATTTAAGAAGATATGA
GAACATAGTTTGCATTTGAGAAGTGACTTTCAGTGCTGTGAGGACCTTCT
ATATGGTAAGTAAAGTAGAAGATGAACAAAAAGAACATGAGACATTTTGT
TGTTCCACATAATGTTCCTGATTAATTAGAGTGGAAATCTTGAAATTTGT
AATTATGCATGTTGAGTGAAATGAAAATGCAGGTAGTTACAGAAAATATT
CCTCAAATTGTTGGCGTAGCCAAAGCTAGAGTCCATATGATGAGCATATA
TTACAAATAGGATTTCTTAGACTGGCTTTCAAAATGCAGGCTGACTACAC
TTCTAGTGACTGTCAAAAACATTATAGAGGCTGAGAACCTTGTTCATTCT
CAGTCTACATGCTGGATCCTTCTGTGGTTTCAGTCTTGTGCTCAATAAGG
CATTTTAGAGGCTGGTCTCTTAGATGAAATTAAGTCCAATAAAGCTGACT
ACCATAATTAATCATTTCAAATACCAAGTTAGAGAAAGTATAACTACCTG
GGAGGTGAAATGATTAGGAAGAAGTAGTTTCCAAGGAATAAGAACAAGNT
TTCTTTTTCTGGATTATTTTTTCTCACAACAGTGCATACTATAGTTTCTA
CTTTGGTGACATTTTCTCAAN

Query= MSMg01no339_l14.g1 MSMg01no339_l14.g1 CHROMAT_FILE:
MSMg01no339_l14.g1 PHD_FILE: MSMg01no339_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:38 2005
         (607 letters)



>mm_chr1_111799321_111800327
          Length = 1007

 Score = 1141 bits (590), Expect = 0.0
 Identities = 601/605 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgatggatcctgatgaacatgcagtgatttaagaagatatgagaacatagtttgcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 805 cttgatggatcctgatgaacatgcagtgatttaagaagatatgagaagatagtttgcatt 746

                                                                       
Query: 61  tgagaagtgactttcagtgctgtgaggaccttctatatggtaagtaaagtagaagatgaa 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 745 tgagaagtgaccttcagtgctgtgaggaccttctatatggtaagtaaagtagaagataaa 686

                                                                       
Query: 121 caaaaagaacatgagacattttgttgttccacataatgttcctgattaattagagtggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caaaaagaacatgagacattttgttgttccacataatgttcctgattaattagagtggaa 626

                                                                       
Query: 181 atcttgaaatttgtaattatgcatgttgagtgaaatgaaaatgcaggtagttacagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcttgaaatttgtaattatgcatgttgagtgaaatgaaaatgcaggtagttacagaaaa 566

                                                                       
Query: 241 tattcctcaaattgttggcgtagccaaagctagagtccatatgatgagcatatattacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tattcctcaaattgttggcgtagccaaagctagagtccatatgatgagcatatattacaa 506

                                                                       
Query: 301 ataggatttcttagactggctttcaaaatgcaggctgactacacttctagtgactgtcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataggatttcttagactggctttcaaaatgcaggctgactacacttctagtgactgtcaa 446

                                                                       
Query: 361 aaacattatagaggctgagaaccttgttcattctcagtctacatgctggatccttctgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacattatagaggctgagaaccttgttcattctcagtctacatgctggatccttctgtg 386

                                                                       
Query: 421 gtttcagtcttgtgctcaataaggcattttagaggctggtctcttagatgaaattaagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttcagtcttgtgctcaataaggcattttagaggctggtctcttagatgaaattaagtc 326

                                                                       
Query: 481 caataaagctgactaccataattaatcatttcaaataccaagttagagaaagtataacta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caataaagctgactaccataattaatcatttcaaataccaagttagagaaagtataacta 266

                                                                       
Query: 541 cctgggaggtgaaatgattaggaagaagtagtttccaaggaataagaacaagntttcttt 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 cctgggaggtgaaatgattaggaagaagtagtttccaaggaataagaacaagttttcttt 206

                
Query: 601 ttctg 605
           |||||
Sbjct: 205 ttctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)