BAC Information

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BAC

Clone NameMSMg01-339L22
Chromosome1 (Build37)
Map Location 37,615,475 - 37,806,065
singlet/doubletdoublet
Overlap gene2010300C02Rik
Upstream geneSema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a
Downstream geneTsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339L22.T7 (MSMg01no339_l22.b1)MSMg01-339L22.TJ (MSMg01no339_l22.g1)
ACCAG453954AG453955
length761757
length of high quality
(start - end)
557 (73 - 629)483 (56 - 538)
definitionCHROMAT_FILE: MSMg01no339_l22.b1 PHD_FILE: MSMg01no339_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:39 2005CHROMAT_FILE: MSMg01no339_l22.g1 PHD_FILE: MSMg01no339_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,615,475 - 37,616,031)(37,805,583 - 37,806,065)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAATCCGCGGAA
TTCTCCAGGTTTTTCCGAAACAGCCCTCTGCTGTGCCTAAGACCTAAGGC
TAAGCGGTGTCTCTCCCAATTCTGAGTCAGCCAGCCCTTGCTTGTTTGCT
CTTGAACTTTGTACCTGTCCCCTGATGGGCCAGAGTCAGGGTTTGGTGGA
ATGGAGGACCCTTCTGATCTCATCTCTCTCGGGGCCCCATGTCTGTTCCT
GTTTCTGCATCTGGAGTTCCAGCTACTGGATGTCTCTTTGTCTGAGTGCA
GAGTCTGAAATAGCTAGCTCAGATTATTCTGCCTGAGGGTGATGGGAGGG
TCCAGGTGCCATTCCTTTCCACCCAGAACCAAACTCACCATATTCCCCCA
AATACTTCTCTCTGGCTTGGATGGTGTGTCTTCCAAGGGTTCCTGTGTTG
TAAGATTGGTCCCCAATGTGGCAATGGTACGCAGTGGCATCTCCAAGAGA
TGGGGCCAAGTGGAAGGTGATGATGTCAAAGGAACATGGTCCTCAGAAGG
GACAGAGACTCACTGGGGAGCTCAGGCTGGCCTTGAATTTACGTGAGCCC
AGGTTAGCCTCCCACTCACTCCTCTAGCCTCTGTTCCTGATCTGGGATTA
CAAACAGGTGCCAGCACTGAANTTTAACCTAGCCTTTATGGGACTTATAT
TAATTCTGTATGAGCCAAGGTTTTGTTGGGTGGGGTGGGTAGTCTTTTCT
TAACATTCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTAACCAGGGGACTGATTTGCATTTTTGATGAATCACTTGATATGG
GGATGGTCTAGACTACAAGCCCTAAAACAGAAACAGTGGGAATGGAGGCA
TGCAGCTGATCACAGAGATATTTAGGAGCTACTATGGGGAAGGTAAGGGG
AGGGCCTCTGCTATTGGTTTCACAGTTGCTGGTGCAGGCACCTGTGGACG
TTCCATTTGCCACAATGATGAACAGAAGGAAGGGATGAGCACACATTCTC
AAAGGAACTGCACTCACTCCAGGCTGTCCTGTATCTCTGGCAGCTCTCAT
ATTCTTTGGTCTCTCCCTTAAGTGGTAGCCTTTTATAAGGGGTCTATTTT
AGACACTCCTTCCTTGTAATTTGTCCCAGAGATCTCATTCCATTCCTTAG
CTTTAATTGCCATCCTCGACCTGGTGACTTATTTCTGTTTCCAGACTTGA
TCTTTCTCTTGAGACCATATCTCAAAGTGCCTACTTAATCTCTCCCCCCA
AATATTTGGGTTCTGGTGCAGTATATCAAAATCCAGCCAGCACCGTTTTC
TTCCCAGCTTCCTCTGTTCTTGCTCTCCAGAAAGCGCCAAATCATGAACT
TTGACTTTAAGGGCCGTTGCTTTTCCCCCCAAACGGCCCTCCTGGTTAGT
TCCGGGGGTAACCCCAATTATCCATCTTCCTTACAAAAATTCTTGAGAGA
AAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_l22.b1 MSMg01no339_l22.b1 CHROMAT_FILE:
MSMg01no339_l22.b1 PHD_FILE: MSMg01no339_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:39 2005
         (557 letters)



>mm_chr1_37615275_37616231
          Length = 957

 Score = 1031 bits (533), Expect = 0.0
 Identities = 551/557 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccctctgctgtgcctaagacctaaggctaagcggtgtctctcccaattctgagtcagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccctctgctgtgcctaagacctaaggctaagcggtgtctctcccaattctgagtcagcc 260

                                                                       
Query: 61  agcccttgcttgtttgctcttgaactttgtacctgtcccctgatgggccagagtcagggt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 agcccttgcttgtttgctcttgaactttgtacctgtcccctgatgggccagaatcagggt 320

                                                                       
Query: 121 ttggtggaatggaggacccttctgatctcatctctctcggggccccatgtctgttcctgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ttggtggaatggaggacccttctgatctcatctctctcggggccccatgtctgttccttt 380

                                                                       
Query: 181 ttctgcatctggagttccagctactggatgtctctttgtctgagtgcagagtctgaaata 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgcatctggagtcccagctactggatgtctctttgtctgagtgcagagtctgaaata 440

                                                                       
Query: 241 gctagctcagattattctgcctgagggtgatgggagggtccaggtgccattcctttccac 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctagctcagagtattctgcctgagggtgatgggagggtccaggtgccattcctttccac 500

                                                                       
Query: 301 ccagaaccaaactcaccatattcccccaaatacttctctctggcttggatggtgtgtctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagaaccaaactcaccatattcccccaaatacttctctctggcttggatggtgtgtctt 560

                                                                       
Query: 361 ccaagggttcctgtgttgtaagattggtccccaatgtggcaatggtacgcagtggcatct 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaagggttcctgtgttgtaaaattggtccccaatgtggcaatggtacgcagtggcatct 620

                                                                       
Query: 421 ccaagagatggggccaagtggaaggtgatgatgtcaaaggaacatggtcctcagaaggga 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaagagatggggccgagtggaaggtgatgatgtcaaaggaacatggtcctcagaaggga 680

                                                                       
Query: 481 cagagactcactggggagctcaggctggccttgaatttacgtgagcccaggttagcctcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagagactcactggggagctcaggctggccttgaatttacgtgagcccaggttagcctcc 740

                            
Query: 541 cactcactcctctagcc 557
           |||||||||||||||||
Sbjct: 741 cactcactcctctagcc 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no339_l22.g1 MSMg01no339_l22.g1 CHROMAT_FILE:
MSMg01no339_l22.g1 PHD_FILE: MSMg01no339_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:39 2005
         (483 letters)



>mm_chr1_37805491_37806373
          Length = 883

 Score =  911 bits (471), Expect = 0.0
 Identities = 480/483 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaccaggggactgatttgcatttttgatgaatcacttgatatggggatggtctagacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 taaccaggggactgatttgcatttttgatgaatcacttgatatggggatggtctagacta 516

                                                                       
Query: 61  caagccctaaaacagaaacagtgggaatggaggcatgcagctgatcacagagatatttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 caagccctaaaacagaaacagtgggaatggaggcatgcagctgatcacagagatatttag 456

                                                                       
Query: 121 gagctactatggggaaggtaaggggagggcctctgctattggtttcacagttgctggtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gagctactatggggaaggtaaggggagggcctctgctattggtttcacagttgctggtgc 396

                                                                       
Query: 181 aggcacctgtggacgttccatttgccacaatgatgaacagaaggaagggatgagcacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aggcacctgtggacgttccatttgccacaatgatgaacagaaggaagggatgagcacaca 336

                                                                       
Query: 241 ttctcaaaggaactgcactcactccaggctgtcctgtatctctggcagctctcatattct 300
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 335 ttctcaaaggaactgcactcactccaggctgtcctgtctctctggcagctctcagattct 276

                                                                       
Query: 301 ttggtctctcccttaagtggtagccttttataaggggtctattttagacactccttcctt 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 275 ttggtctctcccttaagtggtagccttttataagggatctattttagacactccttcctt 216

                                                                       
Query: 361 gtaatttgtcccagagatctcattccattccttagctttaattgccatcctcgacctggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtaatttgtcccagagatctcattccattccttagctttaattgccatcctcgacctggt 156

                                                                       
Query: 421 gacttatttctgtttccagacttgatctttctcttgagaccatatctcaaagtgcctact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gacttatttctgtttccagacttgatctttctcttgagaccatatctcaaagtgcctact 96

              
Query: 481 taa 483
           |||
Sbjct: 95  taa 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)