BAC Information

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BAC

Clone NameMSMg01-339O05
Chromosome1 (Build37)
Map Location 68,118,366 - 68,299,232
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneCps1, Kif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339O05.T7 (MSMg01no339_o05.b1)MSMg01-339O05.TJ (MSMg01no339_o05.g1)
ACCAG454062AG454063
length728745
length of high quality
(start - end)		619 (56 - 674)597 (83 - 679)
definitionCHROMAT_FILE: MSMg01no339_o05.b1 PHD_FILE: MSMg01no339_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:49 2005CHROMAT_FILE: MSMg01no339_o05.g1 PHD_FILE: MSMg01no339_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,118,366 - 68,118,984)(68,298,701 - 68,299,232)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGC
GGAATTCATGTGCTTACTTAAAAAAAAAATGGTCTTAGCATAACTACCAT
CCAAAAAGAATCCTATACTACAGTTAGATAATAAAAAGGTATGATAAAGA
AATATAATAGAAGAATGTGATAATTGTAAGAACAACAACAGAAAGAATGT
AGCTGCCAGGTGCTGTGTATGTTTTAAGGTTGGTAAAATCTACTTCAGAT
CTGAGAATAACAGTTCACTATCAAGGAGGGGTATGGATTAAGAACAGACA
ATAAGAGACATTTGACATCAGTTTTTAATTCAACATGTTCCAACTATCCT
GCTTAGCTGGGACAGACGTCCATAGTTTGTCTTGTAGTTTAATGGCATCA
TTGTCAAAGTGATGGCATTTAAAATCACAGTACAGTGACCTATAGAGCAT
ATATGGGTGTGAAAGACATAAAAACCTCTGCGAAGCTCTGTTCAGTTTAT
CATGTCCTGAATAGTTTTCCTTTTTCCAAAGTTTGTTACATTTGGTAAAT
ATGTCAGTTTATGAAAATTAATTTGTAGGAAAGTGACTAANAAACCATTA
TCGTCTACTGTTTGGCTTTTGTCTTTATGTTAGTCTATTTAAAGATAAAG
GTTCCCTTCAGCAAGGAAAGATAATTAAGATTCTTCAAGGTACAACTGTG
TAGGCTTTAGGTGAAAATCAGCACAGAG

NTTTGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTATCATTTTGTTG
TGTGTAGTTTGTTCAGTTAAATCATTAACTGAGTGTCCAATTTGCACAGA
TTCTAGTCTAGGCTGATTTTGTCTTTCTGATCTTCAAATTCTTTGCAAGT
TCAAAAGACAGAAGTTATCCTTTATCTATCTTTAAGTTATGCTGGAAAAA
AGACACAATTATGCAATTTTATACTTTAAAATTTGAATCCATTTTAAAAT
AATTTTAACTTTAATGTATTTTAATGAAAAATTTTATAAAATTATTTGGA
ATAATGCATACATAATCTTAATTTTTATCTTAAATAAAGGTGTTAGAAGT
AACAAATTGAATCACTACTATCTTATTTCCTATCTCTCAGAAACACTTCT
TTACCATGTCTTCTGTTTCCTTCATTTACATAAAGGTTTTTGCCTCCCAC
TGGCCCCATGATTTATCTGATAATCTCTTGAATGCTCATACACATTAATA
TGAATGAGGCTTTCTGAGCTAGCTATAGAAAAGTCAACAGAAAGCTTTAA
GAACTTCTTTGCTTGTGTTTCATGTTTGCAATCATTTCTACATGCCATAT
TGACAAAACTGAATGTATGTGAATTAATGAGTGCTTATAGAAAAGTCTTT
AGAAGTTTCATCAGTTTTTTTTACCTGTATGTCCGAAATATGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_o05.b1 MSMg01no339_o05.b1 CHROMAT_FILE:
MSMg01no339_o05.b1 PHD_FILE: MSMg01no339_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:49 2005
         (619 letters)



>mm_chr1_68118166_68119184
          Length = 1019

 Score = 1176 bits (608), Expect = 0.0
 Identities = 616/619 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgtgcttacttaaaaaaaaaatggtcttagcataactaccatccaaaaagaatccta 60
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgtgctcatttaaaaaaaaaatggtcttagcataactaccatccaaaaagaatccta 260

                                                                       
Query: 61  tactacagttagataataaaaaggtatgataaagaaatataatagaagaatgtgataatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactacagttagataataaaaaggtatgataaagaaatataatagaagaatgtgataatt 320

                                                                       
Query: 121 gtaagaacaacaacagaaagaatgtagctgccaggtgctgtgtatgttttaaggttggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagaacaacaacagaaagaatgtagctgccaggtgctgtgtatgttttaaggttggta 380

                                                                       
Query: 181 aaatctacttcagatctgagaataacagttcactatcaaggaggggtatggattaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatctacttcagatctgagaataacagttcactatcaaggaggggtatggattaagaac 440

                                                                       
Query: 241 agacaataagagacatttgacatcagtttttaattcaacatgttccaactatcctgctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacaataagagacatttgacatcagtttttaattcaacatgttccaactatcctgctta 500

                                                                       
Query: 301 gctgggacagacgtccatagtttgtcttgtagtttaatggcatcattgtcaaagtgatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgggacagacgtccatagtttgtcttgtagtttaatggcatcattgtcaaagtgatgg 560

                                                                       
Query: 361 catttaaaatcacagtacagtgacctatagagcatatatgggtgtgaaagacataaaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catttaaaatcacagtacagtgacctatagagcatatatgggtgtgaaagacataaaaac 620

                                                                       
Query: 421 ctctgcgaagctctgttcagtttatcatgtcctgaatagttttcctttttccaaagtttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctgcgaagctctgttcagtttatcatgtcctgaatagttttcctttttccaaagtttg 680

                                                                       
Query: 481 ttacatttggtaaatatgtcagtttatgaaaattaatttgtaggaaagtgactaanaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 ttacatttggtaaatatgtcagtttatgaaaattaatttgtaggaaagtgactaaaaaac 740

                                                                       
Query: 541 cattatcgtctactgtttggcttttgtctttatgttagtctatttaaagataaaggttcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cattatcgtctactgtttggcttttgtctttatgttagtctatttaaagataaaggttcc 800

                              
Query: 601 cttcagcaaggaaagataa 619
           |||||||||||||||||||
Sbjct: 801 cttcagcaaggaaagataa 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_o05.g1 MSMg01no339_o05.g1 CHROMAT_FILE:
MSMg01no339_o05.g1 PHD_FILE: MSMg01no339_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:49 2005
         (597 letters)



>mm_chr1_68298236_68299232
          Length = 997

 Score = 1029 bits (532), Expect = 0.0
 Identities = 532/532 (100%)
 Strand = Plus / Minus

                                                                       
Query: 66  agattctagtctaggctgattttgtctttctgatcttcaaattctttgcaagttcaaaag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 agattctagtctaggctgattttgtctttctgatcttcaaattctttgcaagttcaaaag 938

                                                                       
Query: 126 acagaagttatcctttatctatctttaagttatgctggaaaaaagacacaattatgcaat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 acagaagttatcctttatctatctttaagttatgctggaaaaaagacacaattatgcaat 878

                                                                       
Query: 186 tttatactttaaaatttgaatccattttaaaataattttaactttaatgtattttaatga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 tttatactttaaaatttgaatccattttaaaataattttaactttaatgtattttaatga 818

                                                                       
Query: 246 aaaattttataaaattatttggaataatgcatacataatcttaatttttatcttaaataa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aaaattttataaaattatttggaataatgcatacataatcttaatttttatcttaaataa 758

                                                                       
Query: 306 aggtgttagaagtaacaaattgaatcactactatcttatttcctatctctcagaaacact 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aggtgttagaagtaacaaattgaatcactactatcttatttcctatctctcagaaacact 698

                                                                       
Query: 366 tctttaccatgtcttctgtttccttcatttacataaaggtttttgcctcccactggcccc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tctttaccatgtcttctgtttccttcatttacataaaggtttttgcctcccactggcccc 638

                                                                       
Query: 426 atgatttatctgataatctcttgaatgctcatacacattaatatgaatgaggctttctga 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 atgatttatctgataatctcttgaatgctcatacacattaatatgaatgaggctttctga 578

                                                                       
Query: 486 gctagctatagaaaagtcaacagaaagctttaagaacttctttgcttgtgtttcatgttt 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gctagctatagaaaagtcaacagaaagctttaagaacttctttgcttgtgtttcatgttt 518

                                                               
Query: 546 gcaatcatttctacatgccatattgacaaaactgaatgtatgtgaattaatg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gcaatcatttctacatgccatattgacaaaactgaatgtatgtgaattaatg 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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