NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGGATCC
GCGGAATTCTTTGTGTAGCTCTATACCCCAATTTTTATATTTTTTATTAG
GTATTTTCCTCATTTACATTTCCAATGATATCCCAAAAGTCCCCCATACC
CCCCCACTCCCCTACCCACCCACTCCCTCCTTTTGGCCCTGGCATTCCCC
TGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGT
GATGGCCAACTAGGCCATCTTTTGATACACATACAGCTAGAGTAAAGAGG
TCCGGGGTACTGGTTAGTTCATATTGTTGTTCTACCTATAGGGTTGCAGA
TCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTG
TGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGC
CCCGGCATAGTCTCACAAGAGACAGCTATATCAGGGTTCTTTCAGCAAAA
TCTTGCTAGTGTGTGCAATGGTGTCAGCGTTTAGAGGCTGATTATGGGAT
GGATCCCCAGATATGGCAGTCTCTAGATGGTCCATCCTTTTGTCACCAGC
TCCAAACTTTGTCTCTGTAACTCCCTCCATGGGTGTTTTGTTGCCATTTC
TAAAAAAGGGAAAAGTGCCACACTTTGGGCCTCCTGAGTTTCATGGGGTT
AAACAAATGATACCTATATCT

NNNNGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGGAACCAGCTTCGCC
CTGACAACATAAAGAATTTTGACTAGATTTCGTTGAGAAACGTACTCATT
ACTTTCTCATCACTCTGCAGTTGTCTGAGTAGCTAAGTCCTGTTGGCTTA
ATGCTGACCCGTTCACCGCGTGCTCCTGGCTCTCCCTTCGCACCGTTCTT
GCCGGGTTCACCCTAAAAGGAAACGAAATCTCCATGTAAAAACAACAAGG
ATTTGACTAACAAAATCACAATTAGCTAGATGTTATACTGTCATAGAGCT
AGAGGGAGAGCTGGATAACTTAAATGGAGAAGGAGCAAAAGGAATGTCAA
TATTTTGTTGTGAGAGTTAAACATAAACTTCCAGGCATTGAAGGAGAGAC
GAACTTACTGAAGGACCTCGTGTTCCGGGTATACCATTAGTTCCTGCTGG
TCCAGGGGGGCCCCTTGCTCCTATTAGTCCAGGGGCTCCAGGAATGCCAG
CCGGACCCTAAAAAACAACACAAACACTCTCATTAGCAAAGCGTGGACCT
TCCTTTCTACTGTCTGGCTTAAATATTTAATTCTTCTGTGTGANGAAGAG
CTGAGGGTGGAGCAGCTTACTTACCATTTCACCCTTTCCCCAGGACTGCC
GTTATTCCCGGGAGGGCCTAGGG

Query= MSMg01no340_a09.g1 MSMg01no340_a09.g1 CHROMAT_FILE:
MSMg01no340_a09.g1 PHD_FILE: MSMg01no340_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:59 2005
         (536 letters)



>mm_chr1_45388264_45389198
          Length = 935

 Score = 1006 bits (520), Expect = 0.0
 Identities = 532/536 (99%), Gaps = 1/536 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggggaaccagcttcgccctgacaacataaagaattttgactagatttcgttgagaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctggggaaccagcttcgccctgacaacataaagaattttgactagatttcgttgagaaac 676

                                                                       
Query: 61  gtactcattactttctcatcactctgcagttgtctgagtagctaagtcctgttggcttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gtactcattactttctcatcactctgcagttgtctgagtagctaagtcctgttggcttaa 616

                                                                       
Query: 121 tgctgacccgttcaccgcgtgctcctggctctcccttcgcaccgttcttgccgggttcac 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tactgacccgttcaccgcgtgctcctggctctcccttcgcaccgttcttgccgggttcac 556

                                                                       
Query: 181 cctaaaaggaaacgaaatctccatgtaaaaacaacaaggatttgactaacaaaatcacaa 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cctaaaatgaaacgaaatctccatgtaaaaacaacaaggatttgactaacaaaatcacaa 496

                                                                       
Query: 241 ttagctagatgttatactgtcatagagctagagggagagctggataacttaaatggagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttagctagatgttatactgtcatagagctagagggagagctggataacttaaatggagaa 436

                                                                       
Query: 301 ggagcaaaaggaatgtcaatattttgttgtgagagttaaacataaacttccaggcattga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggagcaaaaggaatgtcaatattttgttgtgagagttaaacataaacttccaggcattga 376

                                                                       
Query: 361 aggagagacgaacttactgaaggacctcgtgttccgggtataccattagttcctgctggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aggagagacgaacttactgaaggacctcgtgttccgggtataccattagttcctgctggt 316

                                                                       
Query: 421 ccaggggggccccttgctcctattagtccaggggctccaggaatgccagccggaccctaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 315 ccaggggggccccttgctcctattagtccaggggctccaggaatgccagctggaccctaa 256

                                                                   
Query: 481 aaaacaacacaaacactctcattagcaaagcgtggaccttcctttctactgtctgg 536
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaa-caacacaaacactctcattagcaaagcgtggaccttcctttctactgtctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space:   486550
Effective search space used:   486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)