BAC Information

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BAC

Clone NameMSMg01-340D04
Chromosome1 (Build37)
Map Location 171,649,752 - 171,650,249
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383613, Nuf2, Rgs5
Downstream geneRgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340D04.T7 (MSMg01no340_d04.b1)MSMg01-340D04.TJ (MSMg01no340_d04.g1)
ACCAG454296AG454297
length737743
length of high quality
(start - end)		625 (49 - 673)503 (75 - 577)
definitionCHROMAT_FILE: MSMg01no340_d04.b1 PHD_FILE: MSMg01no340_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:11 2005CHROMAT_FILE: MSMg01no340_d04.g1 PHD_FILE: MSMg01no340_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACATGAGGCTTGTGTTGATAAATAAAATGGCAGTAGGCATCT
GCATTGTATTGATTAAAGCATTCTTTGCTTGTAGACAAAAACATAATCAA
TCAATAAATAAATATCCTGAAACCCAGAGAGCAATTTAAGTCTATTACTC
CCACACAGTTCTATGTGTATCCTAATGAGCTACCACTCATAGTCAGCTCT
GTCTGGTGCTTCCTTAAATCAGACAGCTTACATGCTCTTGTGTCTGTTTT
CTCTCTTTCCACAGACCACCCAGAATTTGCCCATTGTTCTTAAATAACAC
ACACACACACACTTACATGCACTCATGCTCACTCTCACACACGAGCGCTC
ATACACACTTGTATATACATACACACACAGGACTGAATGTGCACAGGCAC
ACTGGTGGGGAAAGGAAGGGAAGATGGAGAGGGGAGAAGGAAAGAGAGAA
AGAAAATACAAAATCAGTGCATACAAGATTGTACTGAAGATATTGGAAGG
CAGGTGAGCTGGTCAGTTTAAGAGTATATAAAACGTANAAGCCCACAGTA
AATGCTCCCATTCTTAANACTACTTTAGCCCTTCTGCCAAACTACACAAT
AACACCCTTTTCCACCTTCCTTTCTTCCATTATTACTCTGGGGTCCAGAT
TTCACTCTTAAGCAAAATACTTTGTGTTTCTTGGGCN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGATGGAAATGGAGAGGAGCCTG
TGAAAAAGAAGGTCCAGTGACAGGCCCAAAGTGGGATCCAGCTCAAGGGG
CAGTCCCAAGGCCTGACACTACTACTGAGGCTATGAAGCGCTCACAAAAA
GGGATCTAACATGACTGCCCTCCGAAAGACCCAACAAGCAGCTGAAAGAG
TCAGATGCAGATATTTGCACCCAACCAATGGACAGAAGCAGCTGATCCCT
GTTGTTGAATTAGGGATGGCTGAAAGAAGCTGAGGAGGACGATCCTGTAA
GGGGACTAGCAATCTCAATTAATCTGGATCCCTGAGATCTCTCAAACACT
GGACCACCAAACAGACAGCATACACCAGCAGATATGAGGCCCCCAACACA
CATAGAGGACTGCCGGGTCTGTGTTCATTCAGAGATGATACACCTAACCC
TCAAGAGAGTGGAGGCCCCAGGGAGTTTAGAGATCAGGTGGGGTGGGGGC
ATCCATGTGGAGACAGGGTGGGGAGGGGAGGAGTTTGGNATGNGGANNNN
TNNNNNGNNNNNTNNNNNTNTTNTNTTTTTNTTTTTTTTTTTTNTNTTTT
TTTTTTTTTTTTNTTTTTTTTTNNTTTTTTTTTTTTNTTTTTTTNNTTTT
TTNTTNTTNTNNNTTTTTNTTNTNNTTNTTTNNTNTTTTTNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_d04.b1 MSMg01no340_d04.b1 CHROMAT_FILE:
MSMg01no340_d04.b1 PHD_FILE: MSMg01no340_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:11 2005
         (625 letters)



>mm_chr1_171649752_171650776
          Length = 1025

 Score =  963 bits (498), Expect = 0.0
 Identities = 498/498 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatgaggcttgtgttgataaataaaatggcagtaggcatctgcattgtattga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaattcacatgaggcttgtgttgataaataaaatggcagtaggcatctgcattgtattga 439

                                                                       
Query: 65  ttaaagcattctttgcttgtagacaaaaacataatcaatcaataaataaatatcctgaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttaaagcattctttgcttgtagacaaaaacataatcaatcaataaataaatatcctgaaa 379

                                                                       
Query: 125 cccagagagcaatttaagtctattactcccacacagttctatgtgtatcctaatgagcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cccagagagcaatttaagtctattactcccacacagttctatgtgtatcctaatgagcta 319

                                                                       
Query: 185 ccactcatagtcagctctgtctggtgcttccttaaatcagacagcttacatgctcttgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccactcatagtcagctctgtctggtgcttccttaaatcagacagcttacatgctcttgtg 259

                                                                       
Query: 245 tctgttttctctctttccacagaccacccagaatttgcccattgttcttaaataacacac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tctgttttctctctttccacagaccacccagaatttgcccattgttcttaaataacacac 199

                                                                       
Query: 305 acacacacacttacatgcactcatgctcactctcacacacgagcgctcatacacacttgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 acacacacacttacatgcactcatgctcactctcacacacgagcgctcatacacacttgt 139

                                                                       
Query: 365 atatacatacacacacaggactgaatgtgcacaggcacactggtggggaaaggaagggaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 atatacatacacacacaggactgaatgtgcacaggcacactggtggggaaaggaagggaa 79

                                                                       
Query: 425 gatggagaggggagaaggaaagagagaaagaaaatacaaaatcagtgcatacaagattgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  gatggagaggggagaaggaaagagagaaagaaaatacaaaatcagtgcatacaagattgt 19

                             
Query: 485 actgaagatattggaagg 502
           ||||||||||||||||||
Sbjct: 18  actgaagatattggaagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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