TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTGTGCTCTCTGCTTTTCCCCTATGTGCTTTTCTTTTCTTGAACTC
TCACACTCACACACCCCTCTGTGTGTTCCCCTTTCACTCGCACACACACA
CACACACACACTTCACACACATATCATACACCACATGCACTCTTCTTTCA
CTCCCACACATACTTTTCATACATGCCTCACATTTTCTTTTCACTCACTC
TTCATGTTCTCTCCTCACTCATTCTTCACATTCTCTTTACTGGCTCTCTT
GCCTTTCTCTTGCCCCAGTCTTTTATTGATACTCCAAAAGCAGGTTAAAA
AAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGACAT
TTTACAATCATTGCCAAATCAAATTCAAAACAAAACAAAACAAAAACAAA
AACAAAAAACAAAAAACAACAACAACAACAAAAAAACATGTCCCACAGAG
AATCAATAATTACAATTATTCCCCACAATTTCAAGATTCCTTATTCCAAG
GCCTATAGCCNAAAGAATAATAATTGCAAACTTATCATTATTTAAACTTT
AACTTATATACTTCAGAGCTCAAAGCTCCGAGGCCAGCTACTTGGCATTT
TCTTAATGAAAAAAGGGATGGGCAAAATGAAAGGGAAAGGCCCCAAAAAA
AACAGGAACCCCTAAATCAAAAGTCTGGTAGGTTTCTGCTTCTGGCATTG
A

NCCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCCTAGGCAAATGGT
TGGACCTGGAGGGCATCATCCTGAGTGTGGTAACACAATCACAAAAGAAC
TCAAATGATATGTACTCACTGATAAGTGGATATTATCCCAGAAACTTAGT
AGACCTGAGATATAAGATGCAACTTGCAAAACACATGTAACTGAAGAAGA
ACAAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATAGGAAACAAC
CACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAACTGAGACAAAAGGA
TGGACCATCTAGAGACTGCCATATTCAGGGATCCATCCCATAATTAGCCT
CCAAATGATAACAACATTGCATACACTAGCAAGCATTTGCTGAAAGGACC
CTGATATAGCTGTCTCTTGTGAGACTATGCCCGGGCCTAGCAAACACATA
AGTGGATACTCACAGTCAGCTATTGGATGGATCGCAGGGNCCCCCATGGA
GGAGCTAGAGAAAGATCCAAGGAGGCTAGGAGATCTGCNACCCTGGAAGT
GCCACAACATTATGAATAAACCGNAACCCCGGGATTCCTTGACTCTAAGT
GGGAAAGGAACCAAAGGGGGCCCAATTGGGCCTCCCTAAGAAAAAAAGAC
CACGGGACTTGGAAATTTTATTGGCCCCCCCCAGGGAAGGCGAGGGCCAA
AATGGGATGGGGGGGGGGGGGGAAAA

Query= MSMg01no340_e21.b1 MSMg01no340_e21.b1 CHROMAT_FILE:
MSMg01no340_e21.b1 PHD_FILE: MSMg01no340_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:18 2005
         (491 letters)



>mm_chr1_115213109_115213999
          Length = 891

 Score =  826 bits (427), Expect = 0.0
 Identities = 463/487 (95%), Gaps = 21/487 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttgtgctctctgcttttcccctatgtgcttttcttttcttgaactctcacac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaattcacttgtgctctctgcttttcccctatgtgcttttcttttcttgaactctcacac 570

                                                                       
Query: 65  tcacacacccctctgtgtgttcccctttcactcgcacacacacacacacacacacttcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcacacacccctctgtgtgttcccctttcactcgcacacacacacacacacacacttcac 510

                                                                       
Query: 125 acacatatcatacaccacatgcactcttctttcactcccacacatacttttcatacatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 acacatatcatacaccacatgcactcttctttcactcccacacatacttttcatacatgc 450

                                                                       
Query: 185 ctcacattttcttttcactcactcttcatgttctctcctcactcattcttcacattctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctcacattttcttttcactcactcttcatgttctctcctcactcattcttcacattctct 390

                                                                       
Query: 245 ttactggctctcttgcctttctcttgccccagtcttttattgatactccaaaagcaggtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttactggctctcttgcctttctcttgccccagtcttttattgatactccaaaagcaggtt 330

                                                                       
Query: 305 aaaaaaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagacattttaca 364
           |||||||||              |||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaaaaaaaa--------------agaaaagaaaagaaaagaaaagaaaagacattttaca 284

                                                                       
Query: 365 atcattgccaaatcaaattcaaaacaaaacaaaacaaaaacaaaaacaaaaaacaaaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||   | |||||    
Sbjct: 283 atcattgccaaatcaaattcaaaacaaaacaaaacaaaaacaaaaa---acaacaa---- 231

                                                                       
Query: 425 caacaacaacaacaaaaaaacatgtcccacagagaatcaataattacaattattccccac 484
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 230 caacaacaacaaaaaaaaaacatgtcccacaaagaatcaataattacaattattccccac 171

                  
Query: 485 aatttca 491
           |||||||
Sbjct: 170 aatttca 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)