Query= MSMg01no340_f07.b1 MSMg01no340_f07.b1 CHROMAT_FILE:
MSMg01no340_f07.b1 PHD_FILE: MSMg01no340_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:20 2005
(389 letters)
>mm_chr1_60401342_60402130
Length = 789
Score = 646 bits (334), Expect = 0.0
Identities = 346/350 (98%), Gaps = 1/350 (0%)
Strand = Plus / Minus
Query: 41 acatctaaattctctaggagactggaacaaacttcctagcttcgatacaatatatacact 100
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 acatctaaattttctaggagactggaacaaacttcctagcttcgatacaatatatacact 730
Query: 101 ggcagttcccaaactgtcccagtctggtttttt-accttaaacctcaagacttttgtact 159
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 729 ggcagttcccaaactgttccagtctggttttttaaccttaaacctcaagacttttgtact 670
Query: 160 tgattttgtctcacttgatgtcaaacaggcatcttaaacctggctcacgtaaccccaaac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgattttgtctcacttgatgtcaaacaggcatcttaaacctggctcacgtaaccccaaac 610
Query: 220 ttctgatctctatgaaacctcattaatttcccaccaagatacaaactaaacaaaatcttc 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttctgatctctatgaaacctcattaatttcccaccaagatacaaactaaacaaaatcttc 550
Query: 280 acattccatggggaaatccattcttctatctgccagtccccatccccacccccagaagtg 339
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 549 acattccatggggaaatccattcttctatctgccagtccccatctccacccccagaagtg 490
Query: 340 tttttcttccagcttctttcagcctcgagttttatatcccgtctcactgg 389
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tttttcttccagcttctttcagcctcgagttttatatcccgtctcactgg 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_f07.g1 MSMg01no340_f07.g1 CHROMAT_FILE:
MSMg01no340_f07.g1 PHD_FILE: MSMg01no340_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:20 2005
(585 letters)
>mm_chr1_60237747_60238731
Length = 985
Score = 1102 bits (570), Expect = 0.0
Identities = 582/586 (99%), Gaps = 2/586 (0%)
Strand = Plus / Plus
Query: 1 ctcgggccctccccccacgccctgccctgcaacgcagcaaacattcccagcaacttttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcgggccctccccccacgccctgccctgcaacgcagcaaacattcccagcaacttttaa 260
Query: 61 gaagctggcgagaaatctcggatatttgttgtgtttgatctgtgctcctggttaagggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gaagctggcgagaaatctcggatatttgttgtgtttgatctgtgctcctggttaaaggaa 320
Query: 121 ggcgtgagtagggagccgtcttccttcccatctacagcagttttggttgtgaatctgcct 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ggcgtgagtagggagccgtcttccttcccatctaccgcagttttggttgtgaatctgcct 380
Query: 181 ggaaggttttagtattttatgttgatcattagtcgtggtgtgccaaacaggagtttctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaggttttagtattttatgttgatcattagtcgtggtgtgccaaacaggagtttctgg 440
Query: 241 aatatctaatcacattaaaaatttatccctttgaatggggtgatcaaggcagacggatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatatctaatcacattaaaaatttatccctttgaatggggtgatcaaggcagacggatat 500
Query: 301 ctggattttttttttttcaaatgtggcttaaaaaaacttaggatatttttgtatttcaca 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggattttttttttt-caaatgtggcttaaaaaaacttaggatatttttgtatttcaca 559
Query: 361 gacctatttacgagaccagctacccctgatgaagaagtgttggagtagttgctgaaattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacctatttacgagaccagctacccctgatgaagaagtgttggagtagttgctgaaattg 619
Query: 421 acccttattgacctgagacagtcttatttgttctacgaatttttttttttgttttttttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acccttattgacctgagacagtcttatttgttctacgaatttttttttttgttttttttt 679
Query: 481 -gtttattccactgctttgagctttactgtaacggctgataaacttggaaaataaagtaa 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtttattccactgctttgagctttactgtaacggctgataaacttggaaaataaagtaa 739
Query: 540 tatgatatggtcttgaaccgtctttttgaggaaatattaaagtacc 585
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tatgatatggtcttgaaccgtctttttgaggaaatattaaagtacc 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
