BAC Information

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BAC

Clone NameMSMg01-340F15
Chromosome1 (Build37)
Map Location 175,969,356 - 176,145,665
singlet/doubletdoublet
Overlap geneOlfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1
Upstream geneGA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205
Downstream geneOlfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340F15.T7 (MSMg01no340_f15.b1)MSMg01-340F15.TJ (MSMg01no340_f15.g1)
ACCAG454412AG454413
length718723
length of high quality
(start - end)		669 (50 - 718)644 (80 - 723)
definitionCHROMAT_FILE: MSMg01no340_f15.b1 PHD_FILE: MSMg01no340_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:21 2005CHROMAT_FILE: MSMg01no340_f15.g1 PHD_FILE: MSMg01no340_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,145,124 - 176,145,665)(175,969,356 - 175,969,998)
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACGGGTCACCATCCAGCTCTCGACCTGGTCACACTTTCC
TCGGAATAACTGTGTGTGTGTGGGGGGGGTAGGTGAAATCAGAGGCAGGC
ATGTGGTAATTCTAGATGGGCGAAGGAACTGATCTTACCCTTCCTCATTG
TGATGACACAAAACATCCTGCCAGGGATGTTACATCCTCTCCCACGGCAT
TCTTAGAATGAATCTCAAGTACCTTGTCACTTCACTGTTTGCTTTAAAGA
TACCATGTGTTCTATGAGCTATAGTAAATGTGAAGATACTGCCAGTGTAC
GGTATTCATCTAGTAGATATAGTAGATAGGAACTGGTTTAGTCTCTCTCT
CTCTCTCTGTCTCTGTCTCTCTCAAGTAGAGACATAGTTTTGGCTAGTTT
GTGATGGCAACAAATTCAGTATGCAGCTTGATCTACGTGTGTCTGATTTT
CCGCAGGTAACTTCTTTAGAACTTTGTACAGTATTAGATGTGTGTAATAT
ATCCATATTCTTTCATCACACACTGTGATCACTCCTTTTTTTATCCTTAG
CGGATTCATACATTATATTCTGTTAGTAAACATCTCCTATTGTAATGATA
TTCATAGAATTGTGACCTTCATTGCTATTCTTCATGAAAACAAATCCTTC
AGTTAATTACTTAATAAN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTGTTAAAGTATTTGATAC
ATGTAAAACACATGGGGAGTAAGTGTCTATGTGAGGAAGACACTACTTGA
ACTTTTTACATATAAATTCCATAATGGAGGTTCTTGTTTGGCTTTTATAT
ATTTCACATTCATCATGTGCAGGTCAGTCAAACTGGTAATAATTCAACTC
AGCCCTTGCCTTTGTACCAACATGTACAGTGACACCCTGGAGAATTCTGT
CATTCTTCTTGCCTATGTGAAATGGGTACCATAACTCAGTTTTCTCCTTA
CTTTTTGTCTTCCTAATGGCAGTTAGTTCAACCATCTATATTGAGCAGTA
GTTTGGAGGAGAACAGAATATTACCCAAGCAGCACACTACTTGGTAACGC
CTAAAAGAAGTGCTGACTCTCTCCTAGAGTAAATTAATTCATCTCTAGGC
TCTATACTTGATGATGACACCAAAAGACCTAAAGACGTTTTATGGAGTGT
TCAGTAGTCACCCAACAATGCAAGCAAATAAATGCTCATTGTTGATTACT
AGAGCAGCACACAGTGTCATCATGTGAAAGTGAATTTTTAAGGTGAGCAC
AATTGTTCCAGTAGATAATATAACTCTATCCTTTATAATAAAGTAAGCCA
CAGGGCATATAACATGAGTGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_f15.b1 MSMg01no340_f15.b1 CHROMAT_FILE:
MSMg01no340_f15.b1 PHD_FILE: MSMg01no340_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:21 2005
         (669 letters)



>mm_chr1_176145124_176146192
          Length = 1069

 Score = 1040 bits (538), Expect = 0.0
 Identities = 541/542 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcacgggtcaccatccagctctcgacctggtcacactttcctcggaataactg 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggaattctcacgggccaccatccagctctcgacctggtcacactttcctcggaataactg 483

                                                                       
Query: 64  tgtgtgtgtggggggggtaggtgaaatcagaggcaggcatgtggtaattctagatgggcg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgtgtgtgtggggggggtaggtgaaatcagaggcaggcatgtggtaattctagatgggcg 423

                                                                       
Query: 124 aaggaactgatcttacccttcctcattgtgatgacacaaaacatcctgccagggatgtta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaggaactgatcttacccttcctcattgtgatgacacaaaacatcctgccagggatgtta 363

                                                                       
Query: 184 catcctctcccacggcattcttagaatgaatctcaagtaccttgtcacttcactgtttgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 catcctctcccacggcattcttagaatgaatctcaagtaccttgtcacttcactgtttgc 303

                                                                       
Query: 244 tttaaagataccatgtgttctatgagctatagtaaatgtgaagatactgccagtgtacgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tttaaagataccatgtgttctatgagctatagtaaatgtgaagatactgccagtgtacgg 243

                                                                       
Query: 304 tattcatctagtagatatagtagataggaactggtttagtctctctctctctctctgtct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tattcatctagtagatatagtagataggaactggtttagtctctctctctctctctgtct 183

                                                                       
Query: 364 ctgtctctctcaagtagagacatagttttggctagtttgtgatggcaacaaattcagtat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctgtctctctcaagtagagacatagttttggctagtttgtgatggcaacaaattcagtat 123

                                                                       
Query: 424 gcagcttgatctacgtgtgtctgattttccgcaggtaacttctttagaactttgtacagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gcagcttgatctacgtgtgtctgattttccgcaggtaacttctttagaactttgtacagt 63

                                                                       
Query: 484 attagatgtgtgtaatatatccatattctttcatcacacactgtgatcactccttttttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  attagatgtgtgtaatatatccatattctttcatcacacactgtgatcactccttttttt 3

             
Query: 544 at 545
           ||
Sbjct: 2   at 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_f15.g1 MSMg01no340_f15.g1 CHROMAT_FILE:
MSMg01no340_f15.g1 PHD_FILE: MSMg01no340_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:21 2005
         (644 letters)



>mm_chr1_175969156_175970199
          Length = 1044

 Score = 1243 bits (643), Expect = 0.0
 Identities = 643/643 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctgttaaagtatttgatacatgtaaaacacatggggagtaagtgtctatgtgaggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgttaaagtatttgatacatgtaaaacacatggggagtaagtgtctatgtgaggaag 260

                                                                       
Query: 61  acactacttgaactttttacatataaattccataatggaggttcttgtttggcttttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactacttgaactttttacatataaattccataatggaggttcttgtttggcttttata 320

                                                                       
Query: 121 tatttcacattcatcatgtgcaggtcagtcaaactggtaataattcaactcagcccttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttcacattcatcatgtgcaggtcagtcaaactggtaataattcaactcagcccttgc 380

                                                                       
Query: 181 ctttgtaccaacatgtacagtgacaccctggagaattctgtcattcttcttgcctatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgtaccaacatgtacagtgacaccctggagaattctgtcattcttcttgcctatgtg 440

                                                                       
Query: 241 aaatgggtaccataactcagttttctccttactttttgtcttcctaatggcagttagttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgggtaccataactcagttttctccttactttttgtcttcctaatggcagttagttc 500

                                                                       
Query: 301 aaccatctatattgagcagtagtttggaggagaacagaatattacccaagcagcacacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccatctatattgagcagtagtttggaggagaacagaatattacccaagcagcacacta 560

                                                                       
Query: 361 cttggtaacgcctaaaagaagtgctgactctctcctagagtaaattaattcatctctagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttggtaacgcctaaaagaagtgctgactctctcctagagtaaattaattcatctctagg 620

                                                                       
Query: 421 ctctatacttgatgatgacaccaaaagacctaaagacgttttatggagtgttcagtagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctatacttgatgatgacaccaaaagacctaaagacgttttatggagtgttcagtagtc 680

                                                                       
Query: 481 acccaacaatgcaagcaaataaatgctcattgttgattactagagcagcacacagtgtca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acccaacaatgcaagcaaataaatgctcattgttgattactagagcagcacacagtgtca 740

                                                                       
Query: 541 tcatgtgaaagtgaatttttaaggtgagcacaattgttccagtagataatataactctat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcatgtgaaagtgaatttttaaggtgagcacaattgttccagtagataatataactctat 800

                                                      
Query: 601 cctttataataaagtaagccacagggcatataacatgagtgag 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctttataataaagtaagccacagggcatataacatgagtgag 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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