NNAATCATCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTAGAATTGGCTTTGGCACTTTAAGTTCAGTTTAGAC
CTTAGGTCAGTGACTTTAACAGAGTACCAAGAAGTCAGGGCTTTCACTAG
GCTGTTTCCTTCAATGCTATTACCTATTTTAAAAGTGTTTTGTCATACAG
ATACACACACACACACACACACACACACACACACACACACACACACACAA
TGCCATTTATACACTTTAATTCCAATATTAAGATACATGATGTCCTTAGC
ATAAAAAAACCAAACCCAAACACAAACACAAACTCAACCCAACCCAAAAA
CAAAAGAACACAAACAAATAAACAAACAAACCTCAAGCCAACCCCAAGTT
TCTTTTCTAGCAGATGAAATGCTGCAGCTTCTTTCTCGAGTATACACTCA
CTGACTTAATAACACAAGTACCCACTTCAGTCATGATATTTGTATTTATC
AGATATGTGGACTTGAGAGAAGATTGGGACGAATTAAAAAATGAAGACGA
GGAAGAGAGAAAATGAGATGAAGCAAGCAGATCATAACTGAGTTAAAATG
AAGGGACTCCCAGGAGGGAGCATAAATGAGGTTAGCAAAATAGCACAGGA
AGATCTGGCCCATGCCTTGCCCCCACAAAACTTGACTTATCTGGTACGGA
GGAGTATTTCTG

NNNTTCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATG
TCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTATTCA
CTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATA
CAATTTCCTAAACC

Query= MSMg01no340_f17.b1 MSMg01no340_f17.b1 CHROMAT_FILE:
MSMg01no340_f17.b1 PHD_FILE: MSMg01no340_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:21 2005
         (532 letters)



>mm_chr1_41339589_41340520
          Length = 932

 Score =  808 bits (418), Expect = 0.0
 Identities = 493/532 (92%), Gaps = 26/532 (4%)
 Strand = Plus / Plus

                                                                       
Query: 3   ctttaagttcagtttagaccttaggtcagtgactttaacagagtaccaagaagtcagggc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 ctttaagttcagtttagaccttaggtcagtgactttaacagagtaccaagacgtcagggc 262

                                                                       
Query: 63  tttcactaggctgtttccttcaatgctattacctattttaaaagtgttttgtcatacaga 122
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  
Sbjct: 263 tttcactaggctgtttccttcaatgctgttacctattttaaaagtgttttgtcataca-- 320

                                                                       
Query: 123 tacacacacacacacacacacacacacacacacacacacacacacacaatgccatttata 182
                               ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 --------------------cacacacacacacacacacacacacacaatgtcatttata 360

                                                                       
Query: 183 cactttaattccaatattaagatacatgatgtccttagcataaaaaaaccaaacccaaac 242
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cactttaattccaatattaagctacatgatgtccttagcataaaaaaaccaaacccaaac 420

                                                                       
Query: 243 acaaa-cacaaactcaacccaacccaaaaacaaaagaacacaaacaaataaacaaacaaa 301
            |||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 421 -caaaacccaaactcaacccaacccaaaaacaaaagaacacaaataaataaacaaacaaa 479

                                                                       
Query: 302 cctcaagccaaccccaagtttcttttctagcagatgaaatgctgcagcttctttctcgag 361
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 480 cctcaagccaaccccaagtttcttttctagcagatgaaatgctgcagattctttctcgag 539

                                                                       
Query: 362 tatacactcactgacttaataac-acaagtacccacttcagtcatgatatttgtatttat 420
           || |||||||||||||||||| | | |||||||||||||||||||||||| |||| ||||
Sbjct: 540 tacacactcactgacttaata-ctataagtacccacttcagtcatgatatatgtacttat 598

                                                                       
Query: 421 cagatatgtggacttgagagaagattgggacgaattaaaaaatgaagacgaggaagagag 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cagatatgtggatttgagagaagattgggacgaattaaaaaatgaagacgaggaagagag 658

                                                               
Query: 481 aaaatgagatgaagcaagcagatcataactgagttaaaatgaagggactccc 532
           |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aaaatgagctgaagcaagcagatcataactgagttaaaatgaagggactccc 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)