Query= MSMg01no340_j17.b1 MSMg01no340_j17.b1 CHROMAT_FILE:
MSMg01no340_j17.b1 PHD_FILE: MSMg01no340_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:38 2005
(652 letters)
>mm_chr2_111026965_111028016
Length = 1052
Score = 665 bits (344), Expect = 0.0
Identities = 457/522 (87%), Gaps = 48/522 (9%)
Strand = Plus / Minus
Query: 7 gaattcacaagagttac-catgctggtaacaacactggtaactattcagctaatgtttat 65
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 gaattcacaagag-gacaaatgctggtaacaacactggtaactattcagctaatgtttat 976
Query: 66 taacaggcaactaatgaggctagtcacaagccacagtgcaggctctgcccttggaaaaca 125
|| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 975 tagcaggcaactaatgaggctaggcacaagccatagtgcaggctctgcccttggaaaaca 916
Query: 126 tctattttggtccgaatttctagttatttgggtggaaacaaaacaaaaccattttgattc 185
|||| |||||||||||||| ||| || ||||||| |||||||||||||||||||||
Sbjct: 915 tctactttggtccgaatttttagataattgggtg-----aaaacaaaaccattttgattc 861
Query: 186 agccaagaattttaataaatttattgttcctaagatgtagccacttaaaaggtaagtgca 245
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 860 agccaagaattttaataaatttattgttcctaagatgtagacacttaaaaggtaagtgca 801
Query: 246 gtccaccaatgaagtatattgttatgttgacttttgtaa-----------aaacaaacaa 294
||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 800 gtccaccaatgaagtgtattgttatgttgacttttgaaaacaacaaaaacaaacaaacaa 741
Query: 295 acaaacaaataac-----------------------aaaaaaaaaaac------ccaaca 325
||||||||| ||| |||||||||||| |||||
Sbjct: 740 acaaacaaa-aacaaaaaacaaaacaaaaaaaaaaaaaaaaaaaaaacaaaaaaccaacg 682
Query: 326 atggccagctgtttttagagtagtttatcagcactggaggacaaatcaaaaatggtatga 385
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atggccagatgtttttagggtagtttatcagcactggaggacaaatcaaaaatggtatga 622
Query: 386 gatgtagagatttcttctgtggctatactttcttattccatgacacagctttcactctgt 445
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 621 gatgtagagatttcttctgtggctatacttccttattccatgacacagctttcattctgt 562
Query: 446 aaaactttgtccccaaaggaactttaaatctgttttgtgcct 487
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaactttgtccccaaaggaactttaaatctgttttgtgcct 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_j17.g1 MSMg01no340_j17.g1 CHROMAT_FILE:
MSMg01no340_j17.g1 PHD_FILE: MSMg01no340_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:39 2005
(546 letters)
>mm_chr1_6126631_6127576
Length = 946
Score = 915 bits (473), Expect = 0.0
Identities = 521/545 (95%), Gaps = 16/545 (2%)
Strand = Plus / Plus
Query: 1 tctgtgtactactgtttctatctgctgatacattcatgtaaaacaaaacaaggctctgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgtactactgtttctatctgctgatacattcatgtaaaacaaaacaaggctctgta 260
Query: 61 agatcaatctctggagtgtagaaagcattttaaaaatgttttttgcctgtgttagtacta 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 agatcaatctctggagtgtagaaagcattttaaaaatgttttttgactgtgttagtacta 320
Query: 121 gggcattccaaacccaggcgctaacgatgtgacccatgacctgcgttgccaagccaatga 180
||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct: 321 gggcattccaaacccaggcactaacgatg-------------g-gttgccaagccaatga 366
Query: 181 ccctcgtatcccagaacccactttggctcacctcccagccttacttgtgttacatcactt 240
||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 367 ccctcctatcccagaacccac-ttggctcacctcccacccttacttgtgttacatcactt 425
Query: 241 tccttataaattaggagatcaccccctcctcactctctttttcttctttccccttccact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tccttataaattaggagatcaccccctcctcactctctttttcttctttccccttccact 485
Query: 301 cgccctgccactccttttcttctttccctaacagtaaaccattctcatgagcaaccgcct 360
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 486 tgccctgccgctccttttcttctttccctaacagtaaaccattctcatgagcaactgcct 545
Query: 361 tggcctggtgtgctgttcaggtatatccacaaaatattattattattaatacatcagact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tggcctggtgtgctgttcaggtatatccacaaaatattattattattaatacatcagact 605
Query: 421 gtcttgtcttttatgtacgatt-atctgggttttgaaaagccacatcatttgcttattta 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 606 gtcttgtcttttatgtacgatttatctgggttttgaaaagccacatcatttgcttattta 665
Query: 480 tatatcatctatgtatgtagtttggatccagctttctttttcttttctttcctttttttt 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tatatcatccatgtatgtagtttggatccagctttctttttcttttctttcctttttttt 725
Query: 540 ttttt 544
|||||
Sbjct: 726 ttttt 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
