Query= MSMg01no340_n08.b1 MSMg01no340_n08.b1 CHROMAT_FILE:
MSMg01no340_n08.b1 PHD_FILE: MSMg01no340_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:55 2005
(599 letters)
>mm_chr1_112365339_112366336
Length = 998
Score = 1081 bits (559), Expect = 0.0
Identities = 586/595 (98%), Gaps = 1/595 (0%)
Strand = Plus / Minus
Query: 5 gaattcctaagatattcatagctaattgcagagtgtcttgagtactcagcaaaagagaag 64
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 798 gaattcctaagatattcatagctaattggagagtgtcttgagtactcagcaaaagagaag 739
Query: 65 aaacaaagctctttctgtgtttcctgaatatatctcttaataggaagggagacttcataa 124
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 738 aaacaaagctctttctgtgcttcctgaatatatctcttaataggaatggagacttcataa 679
Query: 125 acagaaagtaaaacaattaagtaattatctctgcaatgatagatgactcagaatgcagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acagaaagtaaaacaattaagtaattatctctgcaatgatagatgactcagaatgcagag 619
Query: 185 caggaattactagaaactcgttaatatcagtagatacacaaaacaagcctatgaataaca 244
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 618 caggaattactagaaactcattaatatcagtagatacacaaaacaaacctatgaataaca 559
Query: 245 ggaggtttctgtcttgtgctcactcagtcccggatcagatcacaagtctctactgaattg 304
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 558 ggaggtttctgtcttgtgctcactcagtcccggatcagatcacaagtttctactgaattg 499
Query: 305 aagccaggcttcagctgaaagctctctctcaaagctcagagagcctgctgtcaaatacta 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aagccaggcttcagctgcaagctctctctcaaagctcagagagcctgctgtcaaatacta 439
Query: 365 ttttaatactcttgtttttttgagtgtattgaaagcttcaaaattattttattagcatac 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttttaatactcttg-ttttttgagtgtattgaaagcttcaaaattattttattagcatac 380
Query: 425 aaaatagtcacttttatttcattgcaactgtatattttcaaagatgatttacatttgctc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaatagtcacttttatttcattgcaactgtatattttcaaagatgatttacatttgctc 320
Query: 485 ccatgcccagtgtagaagagagttccctcttgactgcatgctcccatgcttcttcttatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 319 ccatgcccagtgtagaagagagttccctcttgactgcatgctcccatgcttctgcttatt 260
Query: 545 cctaaattttcttttctttctttattttctaaaataatttttggtaattttggtg 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cctaaattttcttttctttctttattttctaaaataatttttggtaattttggtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 998
Length adjustment: 10
Effective length of query: 589
Effective length of database: 988
Effective search space: 581932
Effective search space used: 581932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_n08.g1 MSMg01no340_n08.g1 CHROMAT_FILE:
MSMg01no340_n08.g1 PHD_FILE: MSMg01no340_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:56 2005
(563 letters)
>mm_chr1_112203606_112204568
Length = 963
Score = 1036 bits (536), Expect = 0.0
Identities = 556/563 (98%)
Strand = Plus / Plus
Query: 1 cctttaaggcttgcttaactggtaaagcatgaatcttgattgttcaaaaattcagatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttaaggcttgcttaactggtaaagcatgaatcttgattgttcaaaaattcagatcag 260
Query: 61 caggttggagacagggatatgctttatcctctgacacaaggaataacagtctaaagaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggttggagacagggatatgctttatcctctgacacaaggaataacagtctaaagaacc 320
Query: 121 agcatttctacctagaaaaagttaatataatggagttagattttcttgttggtaactttg 180
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatttctacgtagaaaaagtcaatataatggagttagattttcttgttggtaactttg 380
Query: 181 tgaatcctatcagcatgggagcacattaatcagcagaatgtaaatgaattacagtttgag 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaatcctatcagcataggagcacattaatcagcagaatgtaaatgaattacagtttgag 440
Query: 241 atgttaggtgtcctagttagggctttattgctgtgaacagacccacagtctatgtccaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 atgttaggtgtcctagttagggctttattgctgtgaacagacccacagtctatatccaag 500
Query: 301 gcaaatcttactacaacaacttttaattgggtctggcttagaggttcagaagttgagtcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaatcttactacaacaacttttaattgggtctggcttagaggttcagaagttgagtcc 560
Query: 361 attatcaccaagggaggttcatgtcaacatccaggcaggagtagtgcaggaagagctgag 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attatcaccaaggcaggttcatgtcaacatccaggcaggagtagtgcaggaagagctgag 620
Query: 421 agttccacgtcttcatctgaaggctgctcaaagaattctgccttccaggcagctagaata 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttccacgtcttcatctgaaggctgctcaaagaattctgccttccaggcagctagaatg 680
Query: 481 agggtcttaaagcccatatgcagggtgacacagctactccaacaagaccatacctactct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agggtcttaaagcccatatgcagggtgacacagctactccaacaagaccatacctactct 740
Query: 541 aacagggncataacttctaatag 563
||||||| |||||||||||||||
Sbjct: 741 aacagggccataacttctaatag 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
