Query= MSMg01no340_n14.b1 MSMg01no340_n14.b1 CHROMAT_FILE:
MSMg01no340_n14.b1 PHD_FILE: MSMg01no340_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:57 2005
(584 letters)
>mm_chr1_163681873_163682856
Length = 984
Score = 1025 bits (530), Expect = 0.0
Identities = 564/580 (97%), Gaps = 8/580 (1%)
Strand = Plus / Plus
Query: 5 gaattcattttatgtctgtataaaaacctcagacattaagaattttatcatttggactat 64
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttatgcctgtataaaatcctcagacattaagaattttatcatttggactat 264
Query: 65 ggtcaggccagaccatctaaaaatagtttttgtgacaaacatcagaacagcctcacctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtcaggccagaccatctaaaaatagtttttgtgacaaacatcagaacagcctcacctgt 324
Query: 125 gtctgccaggggaccttctctaccggccttgtctcacgtctgtccggaaccctcctctgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctgccaggggaccttctctaccggccttgtctcacgtctgtccggaaccctcctctgc 384
Query: 185 tgaggtcgttactggttatatttgagacctgtggctcaggcatcaaggaaccaagaaaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaggtcgttactggttatatttgagacctgtggctcaggcatcaaggaaccaagaaaca 444
Query: 245 aaacttacgccaaccattgctctaccacagctcgctccctttgaccactgtaggacaatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacttacgccaaccattgctctaccacagctcgctccctttgaccactgtaggacaatt 504
Query: 305 cccacaaacacaagattaaacttacttgggcagaatctctaggtttggaatagggatcta 364
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccca--------agattaaacttacttgggcagaatctctaggtttggaatagggatcta 556
Query: 365 aaggtaaactaatcagatgcctctcgatagaattgcttttgcagcataaattttcactgc 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 557 aaggtaaactaatcagatgcctctcgatagaattgcttctgcagcataaattttcactgc 616
Query: 425 tgttgatggaacccactgccttccttccaaaggaaaatgttctgtacacaaagaattggt 484
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgtcgatggaacccactgccttccttccaaaggaaaatgttctgtacacaaagaattggt 676
Query: 485 cgagaataatttccttaggctagaaagaggcttagccgttgaaggctgctcttccagggg 544
|| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 677 cgggaataatttccttaggatagaaagatgcttagccgttgaaggctgctcttccagggg 736
Query: 545 acacagttttgattgcccacacccacgtggccgctcagaa 584
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 737 acacagttttgattgcccacaccctcgtggccgctcagaa 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_n14.g1 MSMg01no340_n14.g1 CHROMAT_FILE:
MSMg01no340_n14.g1 PHD_FILE: MSMg01no340_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:57 2005
(564 letters)
>mm_chr1_163827203_163828166
Length = 964
Score = 665 bits (344), Expect = 0.0
Identities = 356/360 (98%)
Strand = Plus / Minus
Query: 205 agccaggggaagcaagtcagtaagaaacacccctccatggcctctgcatcagctcctgct 264
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 964 agccaggggaagcaagtcagtaagaaacacccctccatggcccctgcatcagctcttgct 905
Query: 265 tcctgacctgcttgagttccagtcctgacttcctttgatgataaacagcagtatggaagt 324
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 acctgacctgcttgagttccagtcctgacttcctttgatgataaacagcagtatggaagt 845
Query: 325 ataagctgaataaacccttttgtccccaacttgcttcttggtcatgagtttgtgtaggaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ataagctgaataaacccttttgtccccaacttgcttcttggtcatgagtttgtgtaggaa 785
Query: 385 tagaaaccctgactaagacatagttcacagatttgagaattccaatccacattagccagt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tagaaaccctgactaagacatagttcacagatttgagaattccaatccacattagccagt 725
Query: 445 aatttgcaaaggtaaacttactgcacaactagaattaataatgatcatatttgagttgga 504
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aatttacaaaggtaaacttactgcacaactagaattaataatgatcatatttgagttgga 665
Query: 505 tctgttcaacaaatcactagattgcctattcttttggaagacacttatctgggcaacagg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tctgttcaacaaatcactagattgcctattcttttggaagacacttatctgggcaacagg 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
