XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGGTTTTTACATTATTTCTGTGAAGAGTTGTATTGGAAATTTGATGAGC
ATTATATTGAATCTGTAAATAAATTAGGTAAGATGGTCATTACTCCTGGG
AATCCATAATCATGAGGGGTATTTTTCTTTTTTACTGTATTCTTGAATTT
CATCATTAAATGTTGTAAAGATATATATATATATATATATATATATATAT
ATATATATATATATATATATATATATATTCATTTTGTTTGCATTTACTCC
AAGTACCCATCAAGAGGCTATTCTGAATGAGAGTTTATTTTATTTTTCAT
TATGTTTGTCTTTTGTATACAGGAAGGATACTGATTTTTGTGTTAATGTT
GTATCTTGCTTCATTGCTAAATGTGTCTATAATAGTGGTGTTTATAATAT
GAGTAGTGACCCAATTTAGGTGTTCAAATGACCCATAAATAGAGTTGCAT
ATCAATCTGCCTATAAGATAATTATATTTTGACTCATAACAGTAGCAAAT
AAATGTTCAACACCATTAATAATCATGGAAATGTGAATCAAAACTCTTCT
GAGATTCCATTATACATCCGTAACTGTGACTAAGATTAAAAAATTCAAGT
GACAGCACATTGTGGAGAGGATATAGAGTAAGAGGAACAATCTTTCATTG
CAGTTATCAGTGAAAATCTATAAACTGCTTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTTCCTACAGAAGTATAAAT
GTAAAATACTTTCATTATTCATTTGTCATTTCATGAAAACCTATGCTTTT
TCTGTATTCTGGATATTGTGAGTAGAGCAACAGTGAGCATTAATAAGCAT
TTAACTCTTGTAGAAAATTTTAATCCCAATTTGAAGTTTCTACTTAGCCT
TGATCATTCAGTTCTAGAATAAAAGAACCACAACTTTTATTATTTACAAT
AAGCCTTAGACAGTATAAGGTCTGAGTCGATGTCTGCCCTTTATGCTATT
AGAATCTACTCTCCTATAAATTAACTTGAGTTATAACTTTTTATGTTTCA
CCTGGGCTGCTCCGAACACCCAACGGTTTGCCCTCAGGGCTACATTTTCA
TGACTCACCTAATTCATGGTGGCTTCTCCTATTTTCATCTTTTCCCTCCC
TTGTATTTCTGCTTCCACCCCCAAGCCAACAAATCCTAAACTTCACCTAT
ATCTTTTCTGCCCATATGTTGGCTATCACCATCTTTATTCACCAATCAGA
AAGAACTTGAAGGGAAGATTATACAGTGTCTCTTGGATGTATGTGAATAC
TCTCTCATCTTTGGAGCACCAAGTCTTAAGGAACCAGTATTAACATAAGA
ATACAAGCGGAATTCGGGTAATCACTACACNACTCTGTAGTATA

Query= MSMg01no340_o05.g1 MSMg01no340_o05.g1 CHROMAT_FILE:
MSMg01no340_o05.g1 PHD_FILE: MSMg01no340_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:59 2005
         (542 letters)



>mm_chr1_113109563_113110504
          Length = 942

 Score = 1033 bits (534), Expect = 0.0
 Identities = 540/542 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttttcctacagaagtataaatgtaaaatactttcattattcatttgtcatttcatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttttcctacagaagtataaatgtaaaatactttcattattcatttgtcatttcatga 260

                                                                       
Query: 61  aaacctatgctttttctgtattctggatattgtgagtagagcaacagtgagcattaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacctatgctttttctgtattctggatattgtgagtagagcaacagtgagcattaataa 320

                                                                       
Query: 121 gcatttaactcttgtagaaaattttaatcccaatttgaagtttctacttagccttgatca 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatttaactcttgtagaaaatgttaatcccaatttgaagtttctacttagccttgatca 380

                                                                       
Query: 181 ttcagttctagaataaaagaaccacaacttttattatttacaataagccttagacagtat 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagttctagaataaaagacccacaacttttattatttacaataagccttagacagtat 440

                                                                       
Query: 241 aaggtctgagtcgatgtctgccctttatgctattagaatctactctcctataaattaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtctgagtcgatgtctgccctttatgctattagaatctactctcctataaattaact 500

                                                                       
Query: 301 tgagttataactttttatgtttcacctgggctgctccgaacacccaacggtttgccctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagttataactttttatgtttcacctgggctgctccgaacacccaacggtttgccctca 560

                                                                       
Query: 361 gggctacattttcatgactcacctaattcatggtggcttctcctattttcatcttttccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggctacattttcatgactcacctaattcatggtggcttctcctattttcatcttttccc 620

                                                                       
Query: 421 tcccttgtatttctgcttccacccccaagccaacaaatcctaaacttcacctatatcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccttgtatttctgcttccacccccaagccaacaaatcctaaacttcacctatatcttt 680

                                                                       
Query: 481 tctgcccatatgttggctatcaccatctttattcaccaatcagaaagaacttgaagggaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgcccatatgttggctatcaccatctttattcaccaatcagaaagaacttgaagggaa 740

             
Query: 541 ga 542
           ||
Sbjct: 741 ga 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)