CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCACAATAGATAATTAGAAAATGATACTTTAAAATATTTACAATAGG
ATATTTTAAAACATGTATAAAATGCATACATTAAATCAAATATGTATAAC
ATACCATCACTACACAAAATCAAAACACTGACCCTCCTATAAGCTACAAT
CTGTCTGCCTCACAGGAGGTCTCTGGTAAACAGGGAAACGTAAGAATTTC
ACCCAAATGCACAGACCAGCTAGGGCACACACAGAGCACAGCTGACATAG
GACCTACCCACCCTCCTGAGCTCCATCTTGCTTCTAGTCTGCTTTTCCAT
GCAGGCCAGATCAGCAGCCAGATTCCCTCCCATTCCCTACCACCTGTGTA
CCTCCCGGGAGGTATGCAGTAACCAGGATACAGGAGGCCTGCTCTAACCA
GATACAGCACTGCCTGCCTCCCTGGAGATTGGCTCCAATCCAGGTCACAG
AGCTCTATATAACTCCAAGGAGGCTAGCTCCAGTAAGAGACTCCAGGACC
AGTTAACACCAGAGATAACCAGATAGCAAAAGACAAAAACAAGGTCATAA
GGGATAGGAACCAGTGCAATTTGGTACCATCAGAACACAGTTCCCCCACC
ACAACAAGCCCCAGATAGTGTAACATGCCCTGAAAAGTGAGATAATGACC
TGAAATTACATCTCATGAAAATGATAGAGGTTTTTTAAGGAA

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACACATAAAAGGAGTAGATGGCA
AGAAATAATTTAACTTAAGGCTAAAATCAATCAAATATAAACAAACAAAG
CAATACAAAGAAACAATTAAATAAATAGTTGGTTTTTTAAGAGTATCTAA
AGATTGCCAAACTCTTGCCCAAATTAACTAAAAGAGCTTCACTGACAGAA
TTAGGGAAGAAAGGGGGTAATTAATAACAGGCATTGAGGAAATCCAAGCA
ATCACAGGACATACTTTACAAAACTGCACTCCACCAAATATGAATATGTA
AAAGAATGGTATAATTTCTTGATAGGTACCATTTACCAAAGTTAAATCAA
CACCAAATAAACAATTTAAACAGACCATTATTCCTTAATAAAATAGAAGC
AGTAATTAAACAAACAAACAAAACTCTCAGGGCCAGGTGGCTTAAGCACA
AAATTCTACCGGACTTTCGAAGAAGAATTAATGCCAATTTATCTAATATT
GTTCCACATAATTGAAACAGAAGAAGCCTTTCCCAGCTCATTTTATGAAA
TCATAGTTATGTTGACACTTAAACCACATAAAGATGTTATGAAGAAATGG
AATTAAGTACATAAAAAATAGCACCACCATGATAGAGTAGACTTCATCCC
AGAGATGTGAAGGGGGTTCAGCCTACATAAATCAATAAATGTAATCCCTC
CATAA

Query= MSMg01no340_o06.b1 MSMg01no340_o06.b1 CHROMAT_FILE:
MSMg01no340_o06.b1 PHD_FILE: MSMg01no340_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:00 2005
         (596 letters)



>mm_chr1_8603239_8604234
          Length = 996

 Score = 1106 bits (572), Expect = 0.0
 Identities = 578/580 (99%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcacaatagataattagaaaatgatactttaaaatatttacaataggatattttaa 76
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 217 gaattcacaatagataattagaaaatgatactttaaaatatttacaataggatactttaa 276

                                                                       
Query: 77  aacatgtataaaatgcatacattaaatcaaatatgtataacataccatcactacacaaaa 136
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 277 aacatgtataaaatgcatacattaaatcaaatatgtataatataccatcactacacaaaa 336

                                                                       
Query: 137 tcaaaacactgaccctcctataagctacaatctgtctgcctcacaggaggtctctggtaa 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcaaaacactgaccctcctataagctacaatctgtctgcctcacaggaggtctctggtaa 396

                                                                       
Query: 197 acagggaaacgtaagaatttcacccaaatgcacagaccagctagggcacacacagagcac 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acagggaaacgtaagaatttcacccaaatgcacagaccagctagggcacacacagagcac 456

                                                                       
Query: 257 agctgacataggacctacccaccctcctgagctccatcttgcttctagtctgcttttcca 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agctgacataggacctacccaccctcctgagctccatcttgcttctagtctgcttttcca 516

                                                                       
Query: 317 tgcaggccagatcagcagccagattccctcccattccctaccacctgtgtacctcccggg 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgcaggccagatcagcagccagattccctcccattccctaccacctgtgtacctcccggg 576

                                                                       
Query: 377 aggtatgcagtaaccaggatacaggaggcctgctctaaccagatacagcactgcctgcct 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aggtatgcagtaaccaggatacaggaggcctgctctaaccagatacagcactgcctgcct 636

                                                                       
Query: 437 ccctggagattggctccaatccaggtcacagagctctatataactccaaggaggctagct 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ccctggagattggctccaatccaggtcacagagctctatataactccaaggaggctagct 696

                                                                       
Query: 497 ccagtaagagactccaggaccagttaacaccagagataaccagatagcaaaagacaaaaa 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ccagtaagagactccaggaccagttaacaccagagataaccagatagcaaaagacaaaaa 756

                                                   
Query: 557 caaggtcataagggataggaaccagtgcaatttggtacca 596
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 caaggtcataagggataggaaccagtgcaatttggtacca 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)