Query= MSMg01no340_o13.b1 MSMg01no340_o13.b1 CHROMAT_FILE:
MSMg01no340_o13.b1 PHD_FILE: MSMg01no340_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:01 2005
(622 letters)
>mm_chr1_80559481_80560506
Length = 1026
Score = 731 bits (378), Expect = 0.0
Identities = 438/460 (95%), Gaps = 13/460 (2%)
Strand = Plus / Minus
Query: 1 actatagtttgctctctgtttaagaga----gaggcatcactttgtaggtgaattgatgt 56
|||| |||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 456 actagagtttgctctctgtttaagagagagggaggcatcactttgcaggtgaattgatgc 397
Query: 57 atgcatgtatttgccagtggaattatctgtagagagcttatcttcttaacacttacccta 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atgcatgtatttgccagtggaattatctgtagagagcttatcttcttaacacttacccta 337
Query: 117 gctttctgtttcaatccacaaaaagaccatatagaataaaatgattccttgaatcctgta 176
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 336 gctttctgtttcaatccacaaagagaccatatagaataaaatgattccttgaatcctgta 277
Query: 177 cttcattctgggaactcttatttcaagggtagtgtcaatatctcattcaaatggagttgt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 276 cttcattctgggaactcttatttcaagggtagtgtcaatatctcattcaaatgaagttgt 217
Query: 237 ttagaaatatattaaggccgggcattggtggcacacacctttaatcccagcactctggag 296
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 216 ttagaaatatattaaggccgggaattggtggcatacacctttaatcccagcactctggag 157
Query: 297 gcagaggcaggtagatttctgagttcgaggccagcctggtctacagagtgagttccagga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gcagaggcaggtagatttctgagttcgaggccagcctggtctacagagtgagttccagga 97
Query: 357 cagccagagctacacagagaaaccctgtctcaaaaaaaaaaaagaaagaaagaaagaaag 416
||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| ||| |
Sbjct: 96 cagccagagatacacagagaaaccctgtctcaaaaaaaaaaaa-aaa-aaagaa-gaa-g 41
Query: 417 aaagaaagaaagaaagaaagaaagaaagaaaagagaaaga 456
|| ||| ||| ||| ||| ||||||||||||||| |||||
Sbjct: 40 aa-gaa-gaa-gaa-gaa-gaaagaaagaaaagaaaaaga 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1026
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1016
Effective search space: 621792
Effective search space used: 621792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_o13.g1 MSMg01no340_o13.g1 CHROMAT_FILE:
MSMg01no340_o13.g1 PHD_FILE: MSMg01no340_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:01 2005
(582 letters)
>mm_chr1_80402764_80403745
Length = 982
Score = 816 bits (422), Expect = 0.0
Identities = 514/554 (92%), Gaps = 27/554 (4%)
Strand = Plus / Plus
Query: 48 gtggtgg-tgcacacctttaatcccagcacttgggaggcagaggca-gtggatttctgag 105
||||||| | ||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 237 gtggtggct-cacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgag 295
Query: 106 -tctgaggccagcttggactacagagtgagttccaggacagccagggcttatacagagaa 164
|| ||||||||| ||| |||||||| |||| |||||||| ||||| | || ||||||||
Sbjct: 296 ttc-gaggccagcctggtctacagagcgagtcccaggacatccaggac-tacacagagaa 353
Query: 165 actgtgtctc---aaaaacaa---aaaaccaaaaacaaaacaaaacaaaacaaaattcc- 217
|| |||||| |||||||| ||||| |||||||||||||||||||||||| |
Sbjct: 354 accctgtctcgtaaaaaacaaaacaaaac--aaaacaaaacaaaacaaaacaaaa---ca 408
Query: 218 -aaaaaac------cc--ccaaaaaccaaacaacatcttaactagaaacatacacacaca 268
||||||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 409 aaaaaaacaaccaaccaaccaaaaatcaaacaacatcttaactagaaacatacacacaca 468
Query: 269 tacacactgactgtttacatgagagtacactgttaagctaaattgttgtatacatcatct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tacacactgactgtttacatgagagtacactgttaagctaaattgttgtatacatcatct 528
Query: 329 tttcaaggtgatgtactcataatgcctgatattaatcctctttctcacctctgacatcaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tttcaaggtgatgtactcataatgcctgatattaatcctctttctcacctctgacatcaa 588
Query: 389 acacaggaagaattcctatgtatggagtattgaccagattccgtgagtgcttttcatata 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 acacaggaagaattcctatgtatggagtattgaccagattccgtgagtgcttttcatata 648
Query: 449 gctatgtacataagccctagctgtgaagcattgtcatcccgcttctatgataaaagtggg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gctatgtacataagccctagctgtgaagcattgtcatcccgcttctatgataaaagtggg 708
Query: 509 gcctacccattggacacgcaaactttatatgccccagtacaggggaacgccagggccaaa 568
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 709 gcctacccattggacacgcaaactttatatgccccagtacaggggagcgccagggccaaa 768
Query: 569 aagggggagtgggt 582
||||||||||||||
Sbjct: 769 aagggggagtgggt 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
