BAC Information

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BAC

Clone NameMSMg01-341D20
Chromosome1 (Build37)
Map Location 63,462,260 - 63,634,264
singlet/doubletdoublet
Overlap geneLOC100042638, Adam23
Upstream genePard3b, LOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644
Downstream geneGm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341D20.T7 (MSMg01no341_d20.b1)MSMg01-341D20.TJ (MSMg01no341_d20.g1)
ACCAG455084AG455085
length786778
length of high quality
(start - end)		415 (39 - 453)457 (69 - 525)
definitionCHROMAT_FILE: MSMg01no341_d20.b1 PHD_FILE: MSMg01no341_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:26 2005CHROMAT_FILE: MSMg01no341_d20.g1 PHD_FILE: MSMg01no341_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,462,260 - 63,462,671)(63,633,808 - 63,634,264)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TATGTACATCAGGCTAGCCTCAAAATCTCTGAGAGTCATTTGCCTCTGCC
TTCTGAGTTCTGGGATTGCAAGCATGAACCACTAGGCCCAGATTCTTGAA
TATTTCTTGGGCACACATAGAGAAAATTTACATATCCAGTAATTTCTGAG
GGATGCAAGTGTTAGAAACTTGAGAGTGATCAGGGAACAGGGATGATCAA
CTCTTTCTTTAGACTTAGGTTGAAATATTAGTGGGCTTGTCAGCCTTTAG
TGTGATGGAGGACTATGAGTCAACCGAGCATGAGTAGACCAGGCAGCAAT
CAGAGGATGGCCATTTACTCAAGAATAATAGATGTCATCATGTGCTTTCA
GAAAGGCAATTTTTTACTTTAGAGTTTGTAGAATGCTGCAGCACAGAGTC
AATAAATTGTTGAAGTAAATATCCATAGCTGCTTTCAAATGACTTTTACA
ACTTTACAGTGAATGCTCTACGCATGTTGTGATGCAACTTCCCTCCCCTT
CGTATTACCCCTTTGATTTGATACACGTAAGGCCCAGTCGAACAAAAACG
AATTTGCCAATACCCCTCTTCTGTCCCCTTTCACTCCCTATTTCCCCCTC
ACTATCCCACCTNTTTTCTCCCCTTTTAGGGATATTATTTTTTCTATCCC
TACTCCCTCTTTTTCCTTTATTCCCTCTATTTTTTTCCCTTTTATTCTTT
TTTTCCCCTCTCTTTCTTTTCTCTTTCTTTTTCTTT

AGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTGAAGCTCTGAAGGACAACCAACCCAGTAC
TTCTAAATTATCTCTAATTGTCTTCAAAACTGTCCAAGTGGAGGGGAAAC
AAGTGTTTTTCCCCGAGTGCAGACAGCCCTCCATTTCAAGGCAGGAGTAA
CAGTTCACAGCTTGATGCAAACCACCAGCTCTTATTAAGATCTAAAAGCA
AACAGTGTGACAACAATGTATGTGCAGCACGGAGCACAACCGCGTCTCTC
AATTCCAACTCCAGAAGTCACACAAAGGGGCAGTTAATCATTGGAGGAGC
ATTCCTGGCCTGCCACCCTCAAGGCGTGAAAATATTTCCTGCATGGTATT
GTGTAGTATTGTGCCTTTCTACCTTTTACCAAAAAGGAAATATTACAGGG
ACAGGAAATAAGAAGGGGCTTTAACTGAGCTCATCCAGAAGGGTGCCTAT
GTCACAGTCCCCACGCACAGTCAGCAGAGCTGGGTTTGAAACTCTGTATC
CACCCCTCACCTCATGCCCTGATCTTCTGACGACTGGACATCTCTCAGAT
GTGAACCATTTGCGCAAACTCCACTCCCCTTAATCCCCCGCTACTATATC
GTTTTTCCCCCATCATGGTGTTTAAGTCTAATAAACACCCCTACCGCGGT
TTTAATGACTTTGTTATCCAAAATGTTGCCTCTCCTTAAAAACCCATTAA
TGCTCCTTTTTCCTCATATTGGTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_d20.b1 MSMg01no341_d20.b1 CHROMAT_FILE:
MSMg01no341_d20.b1 PHD_FILE: MSMg01no341_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:26 2005
         (415 letters)



>mm_chr1_63462057_63462871
          Length = 815

 Score =  774 bits (400), Expect = 0.0
 Identities = 409/412 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctatgtacatcaggctagcctcaaaatctctgagagtcatttgcctctgcct 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctatgtagatcaggctagcctcaaaatctctgagagtcatttgcctctgcct 263

                                                                       
Query: 64  tctgagttctgggattgcaagcatgaaccactaggcccagattcttgaatatttcttggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgagttctgggattgcaagcatgaaccactaggcccagattcttgaatatttcttggg 323

                                                                       
Query: 124 cacacatagagaaaatttacatatccagtaatttctgagggatgcaagtgttagaaactt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacacatagagaaaatttacatatccagtaatttctgagggatgcaagtgttagaaactt 383

                                                                       
Query: 184 gagagtgatcagggaacagggatgatcaactctttctttagacttaggttgaaatattag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagagtgatcagggaacagggatgatcaactctttctttagacttaggttgaaatattag 443

                                                                       
Query: 244 tgggcttgtcagcctttagtgtgatggaggactatgagtcaaccgagcatgagtagacca 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggacttgtcagcctttagtgtgatggaggactatgagtcaaccgagcatgagtagacca 503

                                                                       
Query: 304 ggcagcaatcagaggatggccatttactcaagaataatagatgtcatcatgtgctttcag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggcagcaatcagaggatggccatttactcaagaataatagatgtcatcatgtgctttcag 563

                                                               
Query: 364 aaaggcaattttttactttagagtttgtagaatgctgcagcacagagtcaat 415
           |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 aaaggcaattttttactttagagtttgtagaatgctgcagcagagagtcaat 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_d20.g1 MSMg01no341_d20.g1 CHROMAT_FILE:
MSMg01no341_d20.g1 PHD_FILE: MSMg01no341_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:26 2005
         (457 letters)



>mm_chr1_63633608_63634464
          Length = 857

 Score =  830 bits (429), Expect = 0.0
 Identities = 450/457 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgaagctctgaaggacaaccaacccagtacttctaaattatctctaattgtcttcaaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 657 agtgaagctctgaaggacaaccaacccagtacttccaaattatctctaattgtcttcaaa 598

                                                                       
Query: 61  actgtccaagtggaggggaaacaagtgtttttccccgagtgcagacagccctccatttca 120
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 597 actgtccaagtggaggggaaacgagtgtttttccccgagtgcagatagccctccatttca 538

                                                                       
Query: 121 aggcaggagtaacagttcacagcttgatgcaaaccaccagctcttattaagatctaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aggcaggagtaacagttcacagcttgatgcaaaccaccagctcttattaagatctaaaag 478

                                                                       
Query: 181 caaacagtgtgacaacaatgtatgtgcagcacggagcacaaccgcgtctctcaattccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 477 caaacagtgtgacaacaatgtatgtgcagcacggagcacaaccgcgtatctcaattccaa 418

                                                                       
Query: 241 ctccagaagtcacacaaaggggcagttaatcattggaggagcattcctggcctgccaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctccagaagtcacacaaaggggcagttaatcattggaggagcattcctggcctgccaccc 358

                                                                       
Query: 301 tcaaggcgtgaaaatatttcctgcatggtattgtgtagtattgtgcctttctacctttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcaaggcgtgaaaatatttcctgcatggtattgtgtagtattgtgcctttctacctttta 298

                                                                       
Query: 361 ccaaaaaggaaatattacagggacaggaaataagaaggggctttaactgagctcatccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ccaaaaaggaaatattacagggacaggaaataagaaggggctttaactgagctcatccag 238

                                                
Query: 421 aagggtgcctatgtcacagtccccacgcacagtcagc 457
           ||| || ||||||||||||||||||| ||||||||||
Sbjct: 237 aagcgtccctatgtcacagtccccacacacagtcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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