BAC Information

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BAC

Clone NameMSMg01-341F01
Chromosome1 (Build37)
Map Location 161,148,185 - 161,148,572
singlet/doubletsinglet
Overlap genenone
Upstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik, EG240853, LOC664972
Downstream geneRfwd2, EG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341F01.T7 (MSMg01no341_f01.b1)MSMg01-341F01.TJ (MSMg01no341_f01.g1)
ACCAG455141AG455142
length744778
length of high quality
(start - end)
388 (67 - 454)215 (75 - 289)
definitionCHROMAT_FILE: MSMg01no341_f01.b1 PHD_FILE: MSMg01no341_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:32 2005CHROMAT_FILE: MSMg01no341_f01.g1 PHD_FILE: MSMg01no341_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGGGATAATATCTATGTAATTAGAATTTCATTACCAATCGTTCCTTAA
GTGTTTTATCTATGCTATGCTTAGACTCACATGGTAGTTGGATAATACCA
AGACTGTGGCAGTACCAGTTTAGGTCCCTATCTGACACCCCATGCTTCTG
GTTCAGTGGCAAAAGCAAACTTTGTTAGATCTTTCAGCAGAAGCCCCTTT
CTTAAGTTGTTTTCCAGTATTTGAACTATTCTTTGGCAGAGGGACTCAGA
ATAAAATCTACCAGTTGGCCTGGCTTAAGACTGGGTTATAGGTGAAACAC
TCCAAGCTTTTGAGGATTTGGATTTATTTAGGACTAGCTGGAAGGGACTC
AGCCCCTGAATATTACTAGAAGTAGGGTAAATGGATGAGAGGATCTAGAC
TCCAGAGACTCTCTGCTTGTGGAAGACCTGAGGCTTGTCATTGTGAGTCA
TACAAAGTCTTCCACAGAGCTTGACGCCTCTTTGCATTGCCCTGTGCCCC
TCATAGGTAGGATTTGTCCTTTTTTCGCTTTTTCTGGTGTTTCCCGTGAT
CTACCTTTTCTACCGCTTATTCTCCGTCCTCTACCTGGTATCCTTATTAT
TATTCTCTTGCTTTTGCCTTGGTCTTGGTCCTTTTTTGCCCCACTATTTC
CACCTTTTTTTTGTCCTTTTCCCGCACACCGTTTTATTTTTTTT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGTTCTATACTCCATTTTA
TGATTGGGTGGTTTGGTTTTTCGGAGGCTACCTTCTTGAGTTCTTCATAT
ATTTTGAATCTTAGCCCTCTATCAGATATGGTAAGTTAATGAAGTTTTTT
TGTAGGTTGCCAATTTGCCCTATTGACTATGTCCTTTGCCTTACAGGAGT
TTTACAGTTTCATGAGGTCCCATTTGTCAATTCTTGATCTTAGAGCCTAA
GCTATTGGAGTTCTATTCAGAAAATCTTTGTCCCTCCCCTCAGCTACCTT
TTATCCTTGTTCCCTGTGCTCCCGAGTTTTATTGCTCTTGATGATCTTCC
CTGATGTCCCTCCACTCATTTTGTTTCTTTTCTTCTACCTCCGCTCAGTT
TCGCATTTTCTTGCCCGGTATTTTTTCTCCCTCGTCTTCCTTTCCCCTCT
TGTCGATGCCTTTCCCGTCTTTCCCCCTCCCTTTCTTTCCTTCCCCCCCT
TCCTCTCTCCTTCCTTATCTCTTCCCGTTCCTTTCTCCCCCTTAGTGCTT
GTTTTATATTCCCCTCTTTTCTCCGCCCCCCTCGCCTCTCTTTTTTTGGT
TTCTTCTTCCGCGTGTTTTTTTTTTTCTTCTGTATTCCCGCTGCTTTTTT
TTATTTTCTCGCCCCCCACCTTTATATCGCCTCTTTTCGCTCCCTCTTCC
CCCCCTTTCGCCTTCCTTTTCCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_f01.b1 MSMg01no341_f01.b1 CHROMAT_FILE:
MSMg01no341_f01.b1 PHD_FILE: MSMg01no341_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:32 2005
         (388 letters)



>mm_chr1_161147985_161148772
          Length = 788

 Score =  735 bits (380), Expect = 0.0
 Identities = 386/388 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaattagaatttcattaccaatcgttccttaagtgttttatctatgctatgcttagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaattagaatttcattaccaatcgttccttaagtgttttatctatgctatgcttagac 260

                                                                       
Query: 61  tcacatggtagttggataataccaagactgtggcagtaccagtttaggtccctatctgac 120
           |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacgtggtagttggataacaccaagactgtggcagtaccagtttaggtccctatctgac 320

                                                                       
Query: 121 accccatgcttctggttcagtggcaaaagcaaactttgttagatctttcagcagaagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accccatgcttctggttcagtggcaaaagcaaactttgttagatctttcagcagaagccc 380

                                                                       
Query: 181 ctttcttaagttgttttccagtatttgaactattctttggcagagggactcagaataaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcttaagttgttttccagtatttgaactattctttggcagagggactcagaataaaa 440

                                                                       
Query: 241 tctaccagttggcctggcttaagactgggttataggtgaaacactccaagcttttgagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaccagttggcctggcttaagactgggttataggtgaaacactccaagcttttgagga 500

                                                                       
Query: 301 tttggatttatttaggactagctggaagggactcagcccctgaatattactagaagtagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttggatttatttaggactagctggaagggactcagcccctgaatattactagaagtagg 560

                                       
Query: 361 gtaaatggatgagaggatctagactcca 388
           ||||||||||||||||||||||||||||
Sbjct: 561 gtaaatggatgagaggatctagactcca 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)