BAC Information

Click to search

BAC

Clone NameMSMg01-341H21
Chromosome1 (Build37)
Map Location 186,997,198 - 186,997,557
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
Downstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341H21.T7 (MSMg01no341_h21.b1)MSMg01-341H21.TJ (MSMg01no341_h21.g1)
ACCAG455275AG455276
length822825
length of high quality
(start - end)
258 (40 - 297)361 (71 - 431)
definitionCHROMAT_FILE: MSMg01no341_h21.b1 PHD_FILE: MSMg01no341_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:46 2005CHROMAT_FILE: MSMg01no341_h21.g1 PHD_FILE: MSMg01no341_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTC
ACTCTGTATACCAGGCTGGCCTCGGACTCAGAAATCTGCCTGTCTCTGCC
TCCCAAGTGCTGGAATTAAAGGTGTGCACCACCACTGCCCAGGTTCAGTC
TATTATCATCATGGCAAAAAGCATGGCAGTGTACAGGTAGATATGGTACT
GGAGGAGCCAAGAATTTTGCATCTTGATCCCAAGGCAACCAGGAGATGAC
TGTCTTCTCCAGGCAGCCACTGGGGGGGGGGGGTCGGGTCTCTTTGGCCC
TGATGGAAGCCTAGTCTTTTTTTTTCAAAACCTACCCCCTTAGTGATATA
CTCCCCCCTTTTTTCTCACCTCCTATGAGCGCCATTCTCTATGCGTCTTG
TCTTATCTTTTCACCTCCAGACCCAGAATGACCCATTAGATTAATTTTAT
TTCTGGATCAGGGTCTGGTTCCAATATCATTCTATTTGTTCCTTTTCCCC
TCTACTTTTTTTTTTTTCCTCCCTTCTTTTCTATTTTATGCGTTTGTCTC
CTCCCTTCCTCCTTCTTCTTCCCCTTTTCACTTTCCCTCTTTCCTCCCCT
TTCCTTTTTCCCCCTTCCTCTCCCCCCCTTTTTTTTCTTCCCCCCCTATT
TTTTTCCTTTTTCTTCTCCCTCTTCTTTTTTTGTTCCCCCTCCTTCCTTT
TCCTGAACTCTCTCTTATTCAACCTATTTCCCCTTCTTCCTTTTTCCCTC
TTTTTTCCCCCCTTTTATCCCTCCTTTTTTTTTTTTTCCCTTTTTTCCAC
CTTCTCCTTTTTTTCCTTATTN
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCAGAAGAAGATACTAGGCGAACTGTGAG
GACTGACAGCAAGCTTTGTCATTTGGAACATCCTGTTCTTAGTAAAATTA
GGCATGTTTCAAAACAGGAAGGGGAAAATGCCAGAAAAATTCCAGGTACA
TATCTCTATAGTTCTCGTGACCATGATGAGGACTGGTACTGTTGGTGTTC
AACGTGGAGTTATAGAGGACGGTCATGTGGTCCTTGGATACAGTTAACTT
GGCCATCCTGTTATGAAGTTTGGGTTGAAACTCTGATTGTTTGCTCTTTC
TTCTTTCTTTTCAGATACCATCTTATCCAGAGAATCATGGGTCATTTGGA
TGACAGACTGACCTCAGGTCTTTGTCCATGGCTATATTTTATGGCTTAGG
ATTCAACGATCCACACCCCATTGAGAAAGAATTCCTATTACACTTTCCCA
AACATATTAAGTGGATATTCCTCATTACATTTGGGATTTTTGCGCCTCCT
TTCTGTCCTTCCCCTACTTGCTCTCCTCTATTTTTCCCCCTCCTCCTCCT
TATCACTCTCGTTTCTTTCTTTCAAATTATTACCACCCTTGTCTCACCAC
CCCCTTACCCTTCCTTATATAATCCTCACTCTTTCCCCCTTTGGTTTTCT
TATCTATCCTCTCTTCCCTCTCATTATATTTTTTATTTCTCTCCCCTCTT
TCTTTTTTTTTCTCACTTTTTTCTCCTTTCCTTCTATCTCCCCCCATTTT
CATTTTCCTTATTTCCCCTTTCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_h21.g1 MSMg01no341_h21.g1 CHROMAT_FILE:
MSMg01no341_h21.g1 PHD_FILE: MSMg01no341_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:46 2005
         (361 letters)



>mm_chr1_186996998_186997758
          Length = 761

 Score =  619 bits (320), Expect = 0.0
 Identities = 350/360 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagaagaagatactaggcgaactgtgaggactgacagcaagctttgtcatttggaaca 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctcagaagaagatactaggcaaactgtgaggactgacagcaagctttgtcatttggaaca 501

                                                                       
Query: 61  tcctgttcttagtaaaattaggcatgtttcaaaacaggaaggggaaaatgccagaaaaat 120
           |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 500 tcctattcttagtaaaattaggcatgtttcaaaacaggaaggagaaaatgccagaaaatt 441

                                                                       
Query: 121 tccaggtacatatctctatagttctcgtgaccatgatgaggactggtactgttggtgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccaggtacatatctctatagttctcgtgaccatgatgaggactggtactgttggtgttc 381

                                                                       
Query: 181 aacgtggagttatagaggacggtcatgtggtccttggatacagttaacttggccatcctg 240
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aacgtggagttacagaggacagtcatgtggtccttggatacagttaacttggccatcctg 321

                                                                       
Query: 241 ttatgaagtttgggttgaaactctgattgtttgctctttcttctttcttttcagatacca 300
           ||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||
Sbjct: 320 ttatgaagtttgggttgaaactctgattgtttgctctctcttctttctttttggatacca 261

                                                                       
Query: 301 tcttatccagagaatcatgggtcatttggatgacagactgacctcaggtctttgtccatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 260 tcttatccagagaatcatgggtcatttggatgacagactgacctcaggtctctgtccatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)