XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTA
ATTGTTACAGTGTTTGCCTAGCATAGGTGAGGTCTTGGGTTCTAGCCACA
ACGCCATGTAATCAGTTATGGAACATTCCTGTAATCCTAGTACTGGGAAT
TGGAAGCTAGAGGATCAGGTCAGGCCAACCCGAGTTACATAAGACCCTGC
CTCATGAATGGACAAGAAGAGACAGCCAAATGATGGTGACAGAGGCTAGA
GACAGAAGTAGGCAGCCATCTGGAGATGTGGTCAGGATAAAATGGCACCG
ACCTACATGACTGGTACAGCAGCATTGAGGTTCGATAGGAAGAGCAAGAT
TTTGCTACCTACTGAAATACTTCTTTAGATTTACTTATTTTCAATTTTAT
GAGTATGATGTCTTGCCTGCACACATGTATGTGCACCAAGTGGGTGTCTG
TTAGATGGATCCCCTGGAAATGGGGTTATAGGTCATTGCAAGCCACCATA
TGGGTTGTAGGAATCGAATCCCAGGCCTCTGTAAGAGAATCTAGTGCTCT
TAAGGACTGAGCTATCTTCGCAGTCCCTGAAAAACATTTTAACTCCAGTT
ATTAACAATGTGTCATATAGTTCATAATGATGAAGAGAGTACATTTTAAC
ACCTTTCCTTGCTCAAATTGAATATCACTTAATTATTTGCACGAGACTAC
TATGTTTCTTTAGCCCCTTTCTTTTCCCCCTCGA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCACTAAACCCATCTGGTCCTGGGCTT
TTTTTTGGTTGGGAGACTATTAACGACTGCTTCTGTTTCTTTAGGGGTTA
TGGGACTGTTTAGATGATTTATCTAATCCTGTTTTAACTTTGGCACCTTG
TATGTCTAGAAAATTGTCCATTTCATCCAGATTTTCCAATTTAGTTGAGT
ATAAACTTTTGTAGTAGGATTTGATGATTTTTTGAATTTCCATGGTTTCC
ATTGTTATGTCTCCCTTTTCTTTTTTTAAAAAACAATTTTTTATTAGATA
TTTTCTTCATTTTATGTCTCCCTTTTCATTTCTGATTTTATTAATTTGGA
TACTGTCTCTATGCCCTCTGGTTAGTCTGGCTAAGAGGTTATCTATCTTG
TTGATTTTCTCACAGAACCTGCTCCTGCTTTTGTTGATTCTTTGTATACT
TCTTTTTGCTCCCATTTGGTTGCCGTTCAATCTGGGCCTGATACTTCCCT
CCCCTTCCTTCTCCTTTCCCCCCTTTTTTCTCTTTTCTCTTTTTCCCCTC
TACCCTTTCTTTCTTCCGTCCCTTTTCCTTTTCTTTTCCCTTTATCCCTC
TTTTTTCCCTTTTCTCTTTTTATTCCCCTCTCTTTCCCCCTCTATTTCCC
CTTCTTTTTTACCCTTTCTTTCCTCTTTCACATTACACTTCTATGCTTAT
TCAAC

Query= MSMg01no341_k11.b1 MSMg01no341_k11.b1 CHROMAT_FILE:
MSMg01no341_k11.b1 PHD_FILE: MSMg01no341_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:58 2005
         (525 letters)



>mm_chr1_132260832_132261757
          Length = 926

 Score =  963 bits (498), Expect = 0.0
 Identities = 519/526 (98%), Gaps = 1/526 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtttgcctagcataggtgaggtcttgggttctagccacaacgccatgtaatcagttat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gtgtttgcctagcataggtgaggtcttgggttctagccacaacaccatgtaatcagttat 260

                                                                       
Query: 61  ggaacattcctgtaatcctagtactgggaattggaagctagaggatcaggtcaggccaac 120
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacattcctgtaatcccagtactgggaattggaagctagaggatcaggtcaggccaac 320

                                                                       
Query: 121 ccgagttacataagaccctgcctcatgaatggacaagaagagacagccaaatgatggtga 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ccgagttacataagaccctgcctcatgaatggacaagaagagacagtcaaatgatggtga 380

                                                                       
Query: 181 c-agaggctagagacagaagtaggcagccatctggagatgtggtcaggataaaatggcac 239
           | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ccagaggctagagacagaagtaggcagccatatggagatgtggtcaggataaaatggcac 440

                                                                       
Query: 240 cgacctacatgactggtacagcagcattgaggttcgataggaagagcaagattttgctac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgacctacatgactggtacagcagcattgaggttcgataggaagagcaagattttgctac 500

                                                                       
Query: 300 ctactgaaatacttctttagatttacttattttcaattttatgagtatgatgtcttgcct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctactgaaatacttctttagatttacttattttcaattttatgagtatgatgtcttgcct 560

                                                                       
Query: 360 gcacacatgtatgtgcaccaagtgggtgtctgttagatggatcccctggaaatggggtta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcacacatgtatgtgcaccaagtgggtgtctgttagatggatcccctggaaatggggtta 620

                                                                       
Query: 420 taggtcattgcaagccaccatatgggttgtaggaatcgaatcccaggcctctgtaagaga 479
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 taggtcattgcaagccaccatatgggttgtaggaatcgaatcccagacctctgtaagaga 680

                                                         
Query: 480 atctagtgctcttaaggactgagctatcttcgcagtccctgaaaaa 525
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctagtgctcttaaggactgagctatcttcgcagtccctgaaaaa 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 926
Length adjustment: 10
Effective length of query: 515
Effective length of database: 916
Effective search space:   471740
Effective search space used:   471740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)