BAC Information

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BAC

Clone NameMSMg01-341L17
Chromosome1 (Build37)
Map Location 185,423,672 - 185,540,749
singlet/doubletdoublet
Overlap geneEG666649
Upstream geneCapn2, LOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
Downstream gene1700056E22Rik, Dusp10, EG433387, EG629032, LOC666714
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341L17.T7 (MSMg01no341_l17.b1)MSMg01-341L17.TJ (MSMg01no341_l17.g1)
ACCAG455456AG455457
length751761
length of high quality
(start - end)		626 (38 - 663)500 (68 - 567)
definitionCHROMAT_FILE: MSMg01no341_l17.b1 PHD_FILE: MSMg01no341_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:03 2005CHROMAT_FILE: MSMg01no341_l17.g1 PHD_FILE: MSMg01no341_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(185,540,447 - 185,540,749)(185,423,672 - 185,424,171)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
GTGTGCGAGATGGAAATACCAGTTACTGTGGGTTGACCATTATACATATT
GCATCCCATAAAGATTATGTCAACAAAGATAAATACAATAAATAGACATA
AGTATAAATAAGTGCATATATTTTAAAATAAAATAAACATGTATACACAT
ATATATCATATATATGATAAACAATAATAAATATATTAAACAATAATAGA
TATGAATATATTCACAATAAATAATAATAGGTAATGGATAATAAATAATA
TAATAATTAATGTATGTTATAATATATAAATATAATAACATACAATACTA
ATAAATATATAATTAATATATAATATAATAAATATATAATGATTAATATA
TTATAATATAAAATATAATAAATAATAAATATATATGATAAACAAAATAT
TATATATATGTTTTTAAATAGAGTCTTACTATATAAACCAGAATGGCTTC
AAATTTATGGTTCCTCTACCTCAGCCTCCTAAGAGCTAAGAGATTACAAA
TTTCTGCCACATGTCTAAATTAAATATTTTAAAGTGTATTCTGGGGAATA
CATTTAAAATCAAGATGAAGAGCTGGGTGGGGGGCAATGGGTCCATTTGT
AGAATGCTTGCTTAGCATGCACAAAGCTCTGGGTTTACTTCTCAGCATCC
CACAAATCACGGTCTTGGTACATGCCCATGGCGCCAGCACTGGAAAGGTA
A

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTGGTTTCTCTGACTAGTCAATCTGCTCTTTA
TAATTTGTTACCAGTGCTGCCATGGTCAGAGTCTGGGCTCTGGCAGGCAT
AAAAAACTAAGCCATCGGTCCTCGATAGGGCAACTAAATAGACAGACAAG
TAATGGTGCAAAGGAGCTATTTATTCACTGTGGCTGTCTTGGAAGAGAAA
CAAAGATGTTTAGTGCAGAAGGTATGCATAATGAAGTAGTCTTGGTCAAA
GGACAGTCCTACCTGTCAGTGATCCATCATCATCTCTGCCCTAGTTGCTT
CTGCAAGATGACCTGACAGTTTGTTAGAACTGTGTGATGAAATCTCTTCC
CGGGAGACAAGTTACTCTGGCTGGCGCCATGGTCCCTAATCGTTTCTTTC
TTCCAGCATGGGCCTCCTAAGGAAATTCCTGTTTCTTGGGGTACACTGTT
TGAATTGACTGAGAGCTAAAGGGAGGGGTACAAGTGTCTGCTTAGAATAC
GTCATTTCTGACAGGAGGGCTACAGATAGAGTTTTATCGGAAGAGAACAT
TGAAATTGCTAAACATCCTATACAGACATATAGTTCTAGAGCCTGCCACA
TTATACCTTGGTATTTACCCCCGCACTGTAATGCTTTTGCTAACCCACTT
GCCTTTCTTGAATACATAACTGCTCCTTGTACCACAAAAATTTTAATCTT
TTGTGTGTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_l17.b1 MSMg01no341_l17.b1 CHROMAT_FILE:
MSMg01no341_l17.b1 PHD_FILE: MSMg01no341_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:03 2005
         (626 letters)



>mm_chr1_185539724_185540749
          Length = 1026

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Minus

                                                                        
Query: 324  aattaatatataatataataaatatataatgattaatatattataatataaaatataata 383
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1026 aattaatatataatataataaatatataatgattaatatattacaatataaaatataata 967

                                                                        
Query: 384  aataataaatatatatgataaacaaaatattatatatatgtttttaaatagagtcttact 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  aataataaatatatatgataaacaaaatattatatatatgtttttaaatagagtcttact 907

                                                                        
Query: 444  atataaaccagaatggcttcaaatttatggttcctctacctcagcctcctaagagctaag 503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  atataaaccagaatggcttcaaatttatggttcctctacctcagcctcctaagagctaag 847

                                                                        
Query: 504  agattacaaatttctgccacatgtctaaattaaatattttaaagtgtattctggggaata 563
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  agattacacatttctgccacatgtctaaattaaatattttaaagtgtattctggggaata 787

                                                                        
Query: 564  catttaaaatcaagatgaagagctgggtggggggcaatgggtccatttgtagaatgcttg 623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  catttaaaatcaagatgaagagctgggtggggggcaatgggtccatttgtagaatgcttg 727

               
Query: 624  ctt 626
            |||
Sbjct: 726  ctt 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_l17.g1 MSMg01no341_l17.g1 CHROMAT_FILE:
MSMg01no341_l17.g1 PHD_FILE: MSMg01no341_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:03 2005
         (500 letters)



>mm_chr1_185423472_185424371
          Length = 900

 Score =  928 bits (480), Expect = 0.0
 Identities = 495/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggtttctctgactagtcaatctgctctttataatttgttaccagtgctgccatggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggtttctctgactagtcaatctgctctttataatttgttaccagtgctgccatggtc 260

                                                                       
Query: 61  agagtctgggctctggcaggcataaaaaactaagccatcggtcctcgatagggcaactaa 120
           |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 261 agagcctgggctctggcaggcataaaaaactaagctatcggtccttgatagggcaactaa 320

                                                                       
Query: 121 atagacagacaagtaatggtgcaaaggagctatttattcactgtggctgtcttggaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagacagacaagtaatggtgcaaaggagctatttattcactgtggctgtcttggaagag 380

                                                                       
Query: 181 aaacaaagatgtttagtgcagaaggtatgcataatgaagtagtcttggtcaaaggacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacaaagatgtttagtgcagaaggtatgcataatgaagtagtcttggtcaaaggacagt 440

                                                                       
Query: 241 cctacctgtcagtgatccatcatcatctctgccctagttgcttctgcaagatgacctgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctacctgtcagtgatccatcatcatctctgccctagttgcttctgcaagatgacctgac 500

                                                                       
Query: 301 agtttgttagaactgtgtgatgaaatctcttcccgggagacaagttactctggctggcgc 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 agtttgttagaactgtgtgatgaaatctcttcccaggagacaagttactctggctggcgc 560

                                                                       
Query: 361 catggtccctaatcgtttctttcttccagcatgggcctcctaaggaaattcctgtttctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catggtccctaatcgtttctttcttccagcatgggcctcctaaggaaattcctgtttctt 620

                                                                       
Query: 421 ggggtacactgtttgaattgactgagagctaaagggaggggtacaagtgtctgcttagaa 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 ggggtacactgtttgaattgactgagagctaaagggaggggcacaagtgtctgcttagaa 680

                               
Query: 481 tacgtcatttctgacaggag 500
           ||||||||||||||||||||
Sbjct: 681 tacgtcatttctgacaggag 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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