BAC Information

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BAC

Clone NameMSMg01-342A11
Chromosome1 (Build37)
Map Location 116,345,342 - 116,345,606
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342A11.T7 (MSMg01no342_a11.b1)MSMg01-342A11.TJ (MSMg01no342_a11.g1)
ACCAG455678AG455679
length729732
length of high quality
(start - end)		272 (35 - 306)502 (65 - 566)
definitionCHROMAT_FILE: MSMg01no342_a11.b1 PHD_FILE: MSMg01no342_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:26 2005CHROMAT_FILE: MSMg01no342_a11.g1 PHD_FILE: MSMg01no342_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATAT
TATCTTAGTCTTCTATTCCTACTAGGTTAGTTCACAAATGCATTTATATT
TACTTTTTGTTTCCAGAGCTCAAGAACAAGTGCCTGTATCTGGGGGTCCA
ATGACCAGATTCAGACAAGTGGTTCCTTGAGAGTCATTTGGTGGTATGTA
AGATGGGGATACCTAGAAGGAATTTTATCACTGTTGCTGTGTTGGGAAGG
AACAGAGAAGACAAGATCCTGTACCCTGTCTTGAGAATAGTGACAGAAAC
TTCTGTATTCTTTGAGGAGGACAAAAACACACTGTGAGAAATAACTGTAA
GGCTCTCTTGGCCAAATTCTTGCTGGATTGATTAGTTTAATCCCATTTCT
GTCTTCAAAAAGGCCTGTGCAGATGGCCAGAACCACCTTAAAAATCTTAA
ATCCTTAAATGGTATTTATTTTTATAGAGATTTATATTTAATATCTCTCT
CTCTCTCTCTCTCTGTCTCTTTTTGTCTCTGCCTCTCTGTGTCTCTGTAT
CTCTGGCCGTCTCTGTCTCTGGCCCTCTGTGGCCCTGTCTCTGTCCCTGT
ATCTGCCCCCGGCTTTGGCTCTGAATCTGTCCTTGTCCTGGCCCCTTTTC
TTTCTTTCCCTCCCCCCTTTTTCCCTTAATACCTATGTTTTCTTGCCCTG
AAAGATTTCTTTTTTTTGTTTTATCCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAATGAAAATGAAGCCACAGCATATAGAATGAAAGTA
GTGCTCAGAGGAAAATCATAGTTTTGAGAGCTTCCCAAAAGAAACTAGAG
AGACCATAAACAAGCAGCTTTACAGCATATCTGAAAGCTCTGCAATAAAA
AGAAGCAAGTACACCCAAGAGAAGTAGATAACAGGAAATAGTCAAACTCT
CGACTGAACTGAACCAAGCAGAAAAAAAAGAACAATACATTAAAAAAAAA
AAAGCATGGAGATTGCTCTTTGAGAAAATCCACAAAAATAGATCAACCCT
TATCCCCTTATCCTGACTAACTAGAAGGCACTGATACAGTATCTTAATTA
ACAAAATAAGAAATTAAAATGGAGACATAATTACAGAAACTGAGGAAATC
AAAAAAAAAAAATCACCAGATTCTATTACAAAAGCCTATACTGAACAAAA
CTGGAAAACCTGGATAAAATCTTAGACAGATACCAGGAACAAAAGTTAAA
TCAATTTTGGATTAACTGTCTAAACAGTCCCATAGCCCTTTAAGAAATAG
AAGCAGTCATTACTACCCCCCCAAAAAAAGCCCAGGACCAGAGGGGGGTT
AGTACAGAGTTCCCTAAGACCCTCCAAGAAAATCTAATACCCTGACCTAC
TGTTTAATCGCCACCAATTGTTGAATAAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_a11.b1 MSMg01no342_a11.b1 CHROMAT_FILE:
MSMg01no342_a11.b1 PHD_FILE: MSMg01no342_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:26 2005
         (272 letters)



>mm_chr1_116345138_116345809
          Length = 672

 Score =  497 bits (257), Expect = e-145
 Identities = 263/265 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatattatcttagtcttctattcctactaggttagttcacaaatgcatttata 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaattctcatatgatcttagtcttctattcctactaggttagttcacaaatgcatttata 410

                                                                       
Query: 65  tttactttttgtttccagagctcaagaacaagtgcctgtatctgggggtccaatgaccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttactttttgtttccagagctcaagaacaagtgcctgtatctgggggtccaatgaccag 350

                                                                       
Query: 125 attcagacaagtggttccttgagagtcatttggtggtatgtaagatggggatacctagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 attcagacaagtggttccttgagagtcatttggtggtatgtaagatggggatacctagaa 290

                                                                       
Query: 185 ggaattttatcactgttgctgtgttgggaaggaacagagaagacaagatcctgtaccctg 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 289 ggaattttatcactgttgctgtgttgggaaggaacagagaagacaagatcctgttccctg 230

                                    
Query: 245 tcttgagaatagtgacagaaacttc 269
           |||||||||||||||||||||||||
Sbjct: 229 tcttgagaatagtgacagaaacttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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