BAC Information

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BAC

Clone NameMSMg01-342N01
Chromosome1 (Build37)
Map Location 188,524,006 - 188,524,337
singlet/doubletsinglet
Overlap geneTgfb2
Upstream geneLOC677785, Lyplal1
Downstream geneRrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342N01.T7 (MSMg01no342_n01.b1)MSMg01-342N01.TJ (MSMg01no342_n01.g1)
ACCAG456276AG456277
length728710
length of high quality
(start - end)
240 (62 - 301)332 (64 - 395)
definitionCHROMAT_FILE: MSMg01no342_n01.b1 PHD_FILE: MSMg01no342_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:26 2005CHROMAT_FILE: MSMg01no342_n01.g1 PHD_FILE: MSMg01no342_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCGGCACGGAGGCGCGGAATTCAGTNC
TGCTACACAGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG
TTTTGTTTTGTTTTGTTTTTAACAGTTCCCCCACCCCCTTCCCTTTCTCC
CTTTTGCTCTGGCCCTGTTCACTCCGGCCCATAGGTTATTTATTTCTCAT
TTTGGATGGTTGTGAACCACCATTTGGTTGCTGGGATTTGAACTCATGAC
CTCCGGAAGAGCAGTTGGTGCTCTTAACTGCTGAGCCATCTCACCAGCCC
TTTTATTGTTTTATTTATTATATGTAAGTACACTGTAGGTGTCTTCTGAC
ACTCCAGAAGAAGGAGTCAGATCTCATTATGGAGGCTGGTGGATCCGCAC
ATGCCCTGCTGTGATTTGAATTCCGAACCCTTTGAATAGTACTTTCTGTT
CTTAACCATCTGATCAACCCTTTCCAGCTCCTTTGTTTCCCTGGTTTTTC
ATTATGTGCCCGCCATATTTATTTTTTATTTTTTTTCTGCAACATTTCAT
TTTGGCTACCAACCTCTTTACCTTTCACCCCTTGTATTTCGCTCTCCCAC
CACTCGTTTTTCCCCCTTTTTTTTTTTTTACATCCCCTACTCCTCCCCCA
CTGTCTTTTTTTTTTTTTTTCCCCCATACCCTCACACACTAATTTTATCC
CCGCCACCTAATCCTTCTTTACGTCCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACTCCTAGTAATATTTTAAAAAGTAATAGCAACAAC
AAAATATCTTTATGATCAAAGGATATTAAAATAAAATCATCAAATAGAGA
ATAATCAGAATAGAATATGGATTGGGCTACTTTGTATGACATGTTCTTTA
TTATTGTGATATTGAAGCTCCTACATTCGAAACAACCAACATTCCCATTC
ATTTGCCTTCAGTAATGGGGTTGGTCCCTCATTCACCAGGAATGCCAAGT
CAGCACATATAAAACAAAAAGAACCCGAGGAATTATCTTGGATTTTCCTT
TCAAATAGAATAAGCTTTGTGTTAATGAAGAGTGGAATCTGCAGCGCTGG
GTAGGCACACACAGTGACTTGCCATGTCGGCTGGTTCTATCTCTGAATCA
CGTGGTCTGATGTGCAGAGCGTGGAAACATCACAAAGAGGTAGTCTTTGC
TAGTTCTTTCACATGAAGGCTAACCACTTAATGCTAATCAATTCTCCCTC
GCGGGTCCTCCTGTAATTTCCAAGCGAATTTGCGGGATGCACAATGAATG
CCAATGTCATTATGCCTTTGACTAATGCGACTTAACATTCCATTCTTGTA
GTTGTCTTTCTATTTTTTCTTATTGTTGTGCCACTTTTAGTTATACCTAC
CAAAATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_n01.g1 MSMg01no342_n01.g1 CHROMAT_FILE:
MSMg01no342_n01.g1 PHD_FILE: MSMg01no342_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:26 2005
         (332 letters)



>mm_chr1_188523806_188524537
          Length = 732

 Score =  603 bits (312), Expect = e-177
 Identities = 327/332 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactcctagtaatattttaaaaagtaatagcaacaacaaaatatctttatgatcaaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tactcctagtaatattttaaaaagtaatagcaacaacaaaatatctttatgatcaaagga 473

                                                                       
Query: 61  tattaaaataaaatcatcaaatagagaataatcagaatagaatatggattgggctacttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 472 tattaaaataaaatcatcaaatagagaataatcagaatagaatatggactgggctacttt 413

                                                                       
Query: 121 gtatgacatgttctttattattgtgatattgaagctcctacattcgaaacaaccaacatt 180
           |||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 412 gtatgacatgttttttattgttgtgatattgaagctcctacatttgaaacaaccaacatt 353

                                                                       
Query: 181 cccattcatttgccttcagtaatggggttggtccctcattcaccaggaatgccaagtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cccattcatttgccttcagtaatggggttggtccctcattcaccaggaatgccaagtcag 293

                                                                       
Query: 241 cacatataaaacaaaaagaacccgaggaattatcttggattttcctttcaaatagaataa 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cacatagaaaacaaaaagaacccgaggaattatcttggattttcctttcaaatagaataa 233

                                           
Query: 301 gctttgtgttaatgaagagtggaatctgcagc 332
           ||||||||||||||||||||||||||||||||
Sbjct: 232 gctttgtgttaatgaagagtggaatctgcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)