XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGGA
TGCACTGGATGCCATATTAGCTGAAAATTGCAAGCTCTAGGTTCTTGGAG
AGGCACTGAGTTAAAAGCCAAAAGAAAGTATAGAGTAAGAAAGGATAACA
GCTACCACACTTCTTCTCCTCTGCACAACACCAAACATACATACCCAAAC
ATACCCCGAGTCTTCAAGTCATAGCTACTTTGGAGAGCTGAATAAATATC
ATATATTGGAATAGGCCTTTGACTTATGATGTTGCTTCTGTGTTGACAAA
AATATTATTAAAATGACCATAATTCCAAAAGAATCACACACACACACCAC
AGAGAGAAAGACAGACAGAGACAGAGAGACAGAGAGGTTGAGAGACAGAG
ACTCCCACACAGAGACAGAGACAGACATCTTTCTTAAATCTCTCATCAAA
GATGTGGACTGTCAACTAAAATGAAACCAGACAATTTTTTTTACCCTTTA
AAGTTCATTTTTAAAGGCCAAAGGATTTCCAAGAGAGAAATGAATAAAAG
CACTATTTTCATTAAGCCCAAATATTTATTGAGTGCTTAATCCCAGAAAT
TGTTTTAGGAAATCTTATGTATATTACAGATAAATGCACAAGAACTCTGT
CCTTAAAGAGTTCAATTTTGCAGTAGGCAAGGAGGAGTCTGAGGAAGACA
CAGAATCCAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGGCCCATACGTAACATGATAAAAGCAATCTACA
GCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATC
CCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACATTTT
CAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACGAAAGGAGA
TCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCAATTTTTGCA
GATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACT
CCTAAACCTGATAAACACCTTCGGTGAAGTAGCTGGATATAAAATAAACT
CAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAA
GAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATA
TCTCGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACT
TCAAGTCTCTGAAGAAAGAATTAAAGAAGATCTCAGAAGATGGAAAGATC
TCCCATGCTCATGGATTGGCAGGATCCACATTGTAAAAATGGCTATCTTG
CCCAAAAGAATCTACAGAATCATTGGATCCCCATCAAAATTTCCAATCAA
TTCTTTCACGGAATAAAAGGGAGAGA

Query= MSMg01no342_p13.b1 MSMg01no342_p13.b1 CHROMAT_FILE:
MSMg01no342_p13.b1 PHD_FILE: MSMg01no342_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:38 2005
         (369 letters)



>mm_chr1_114900899_114901667
          Length = 769

 Score =  627 bits (324), Expect = 0.0
 Identities = 356/374 (95%), Gaps = 14/374 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttggatgcactggatgccatattagctgaaaattgcaagctctaggttcttgg 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttggatgtactggatgccatattagctgaaaattgcaagctctaggttcttgg 263

                                                                       
Query: 64  agaggcactgagttaaaagccaaaagaaagtatagagtaagaaaggataacagctaccac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaggcactgagttaaaagccaaaagaaagtatagagtaagaaaggataacagctaccac 323

                                                                       
Query: 124 acttcttctcctctgcacaacaccaaacatacatacccaaacataccccgagtcttcaag 183
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 gcttcttctcctctgcacaacaccaaacatacatacccaaacatacccccagtcttcaag 383

                                                                       
Query: 184 tcatagctactttggagagctgaataaatatcatatattggaataggcctttgacttatg 243
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcatagctactttggagagctgtataaatatcatatattggaataggcctttgacttatg 443

                                                                       
Query: 244 atgttgcttctgtgttgacaaaaatattattaaaatgaccataattccaaaagaatcaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgttgcttctgtgttgacaaaaatattattaaaatgaccataattccaaaagaatcaca 503

                                                                       
Query: 304 cacacacac----------cacagagagaaagacagacagagacagagagacagagaggt 353
           |||||||||          |||||||||||||||||| |   ||||||||||||||||||
Sbjct: 504 cacacacacacacacacaccacagagagaaagacaga-a---acagagagacagagaggt 559

                         
Query: 354 tgagagacagagac 367
           ||||||||||||||
Sbjct: 560 tgagagacagagac 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)