BAC Information

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BAC

Clone NameMSMg01-343A03
Chromosome1 (Build37)
Map Location 179,199,746 - 179,370,585
singlet/doubletdoublet
Overlap genenone
Upstream genePld5, Cep170, Sdccag8, LOC666235, Akt3
Downstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343A03.T7 (MSMg01no343_a03.b1)MSMg01-343A03.TJ (MSMg01no343_a03.g1)
ACCAG456422AG456423
length727732
length of high quality
(start - end)
466 (36 - 501)388 (75 - 462)
definitionCHROMAT_FILE: MSMg01no343_a03.b1 PHD_FILE: MSMg01no343_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:41 2005CHROMAT_FILE: MSMg01no343_a03.g1 PHD_FILE: MSMg01no343_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,370,125 - 179,370,585)(179,199,746 - 179,200,133)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGAG
GATTAACGGAAAAAGATGTTTATATTTATAAAGCCATGTTTCACCAATTA
AAAGCTAACAATAAGGGGTTAACAAACCTCTTGATAAATAGATATAAAGT
ACCTGCTAATGTCAGGATATCAAATCATAAATTTGTAAGAAAACTGGGAT
TCAGATTATCCATCAAAACTTAGACTCGGTTTTATGGCATCCAGAACGAA
ATCACAGCTCTGACAACGGTTTTACACAGTGTACCTGCTAGCAGAGCTAA
CAGTCCCAGAGATTTTTTAAGACACTGGTGGGTCGAAAGTCATAAATATG
GCTTGCTCTATTTTGGGGCTGTTTTCCCTGTGAGCCATAACTAGTATCCA
TTTTGAGAACAGAAAAGTATGTCCAGGATATACAGATTAAATGAATATTT
AAGGAAGCCAGTCTGTCACCCCTCACTGCTATGACAGTTATATCCAAGGC
CCCTGGTGCAATTGTATTTTCTCTCCTCCCTCCCCCACCCCAACTTCATT
TAAACTCTACCCTTTGGTTCTCGGGGAAAATTCACATACAATCCCTACCT
ATAAAGTTTTGATGGGTATCAGAGGTGTCTGCATTCTGAAAAGGCTTCTA
TTTTTTTTTTTTCCCCCCTCTGTATTCTAAGCAAGATCTCCTCTCAAAAG
TTTATATACATCCTCCTCTGTTTTATT
CTGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGGGAGATAAAACCATTGTGAACT
GGGCAGAGGTAAGAAGGCAGAGGACCAACAACTGATCTTGTGCTAGGTTG
ATTTCATTATGAAGACAAAATGAAGAGTTTTCATATCCACTTCAAAAGTA
TATATTGATGTGTAAATATTTTCTCTCATTTGCATATGTGCTCACATGAA
TGATATACAGAATATTACACTATACAGAATAAAATATATTTATGTTAGCA
GGTGTTAAAGGCACAAAATTAATGTCTTCTCTACATTTGTATTTTTGTTT
GACAAATATTGTGCCAAAATTTATCTATTTTTGTACATTGTTATTTACAT
TAATGTTATTAAATATTTTAGAGAATCTTGCCCTGGATTGATTCCTCAGA
ATTTTTTCTTAAAAGGTTTAAAATCATCTGACAATTCATGAGGTATAAAC
AAGTGGAATTTTGTGAGTTAGAGACTTACCTGATCCACATAGTGAGTGGT
CTACACAGAAATTTTAACATTGTATCCCTTGCAATTTCCTCCCTATTCTT
TCCATGATATTCTTTGCTTCCCATCCAGCACTGTATTTGTCCTCGGAACA
ATCTTTTTTCTACATTACCATCTTTTAATCCTTTGATATAACTTTGACTC
TTTCCAACACCTCTTAAATTTCTGTGCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_a03.b1 MSMg01no343_a03.b1 CHROMAT_FILE:
MSMg01no343_a03.b1 PHD_FILE: MSMg01no343_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:41 2005
         (466 letters)



>mm_chr1_179370109_179370974
          Length = 866

 Score =  799 bits (413), Expect = 0.0
 Identities = 448/467 (95%), Gaps = 13/467 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagaggattaacggaaaaagatgtttatatttataaagccatgtttcaccaatt 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattcaagaggataaaaggaaaaagatgtttatatttataaagccatgtttcaccaatt 418

                                                                       
Query: 65  aaaagctaacaataaggggttaacaaacctcttgataaatagatataaagtacctgctaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaaagctaacaataaggggttaacaaacctcttgataaatagatataaagtacctgctaa 358

                                                                       
Query: 125 tgtcaggatatcaaatcataaatttgtaagaaaactgggattcagattatccatcaaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgtcaggatatcaaatcataaatttgtaagaaaactgggattcagattatccatcaaaac 298

                                                                       
Query: 185 ttagactcggttttatggcatccagaacgaaatcacagctctgacaacggttttacacag 244
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 297 ttagactcagttttatggcatccagaacgaaatcacagctctaacaacggttttacacag 238

                                                                       
Query: 245 tgtacctgctagcagagctaacagtcccagaga-------ttttttaagacactggtggg 297
           |||||||||||||||||||||||||||||||||             ||||||||||||||
Sbjct: 237 tgtacctgctagcagagctaacagtcccagagacagacag------aagacactggtggg 184

                                                                       
Query: 298 tcgaaagtcataaatatggcttgctctattttggggctgttttccctgtgagccataact 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tcgaaagtcataaatatggcttgctctattttggggctgttttccctgtgagccataact 124

                                                                       
Query: 358 agtatccattttgagaacagaaaagtatgtccaggatatacagattaaatgaatatttaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 agtatccattttgagaacagaaaagtatgtccaggatatacagattaaatgaatatttaa 64

                                                          
Query: 418 ggaagccagtctgtcacccctcactgctatgacagttatatccaagg 464
           |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 63  ggaagccagtctgtcacctctcactgctatgagagttatatccaagg 17


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no343_a03.g1 MSMg01no343_a03.g1 CHROMAT_FILE:
MSMg01no343_a03.g1 PHD_FILE: MSMg01no343_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:41 2005
         (388 letters)



>mm_chr1_179199546_179200333
          Length = 788

 Score =  719 bits (372), Expect = 0.0
 Identities = 384/388 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgggagataaaaccattgtgaactgggcagaggtaagaaggcagaggaccaacaactg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgggagatacaaccattgtgaactgggcagaggtaagaaggcagaggaccaacaactg 260

                                                                       
Query: 61  atcttgtgctaggttgatttcattatgaagacaaaatgaagagttttcatatccacttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttgtgctaggttgatttcattatgaagacaaaatgaagagttttcatatccacttca 320

                                                                       
Query: 121 aaagtatatattgatgtgtaaatattttctctcatttgcatatgtgctcacatgaatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtatatattgatgtgtaaatattttctctcatttgcatatgtgctcacatgaatgat 380

                                                                       
Query: 181 atacagaatattacactatacagaataaaatatatttatgttagcaggtgttaaaggcac 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacagaatattacactatgcagaataaaatatatttatgttagcaggtgttaaaggcac 440

                                                                       
Query: 241 aaaattaatgtcttctctacatttgtatttttgtttgacaaatattgtgccaaaatttat 300
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 aaaattaatatcttctctacatttgtatttttgtttgacaaatattgtgccaaaattttt 500

                                                                       
Query: 301 ctatttttgtacattgttatttacattaatgttattaaatattttagagaatcttgccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatttttgtacattgttatttacattaatgttattaaatattttagagaatcttgccct 560

                                       
Query: 361 ggattgattcctcagaattttttcttaa 388
           ||||||||||||||||||||||||||||
Sbjct: 561 ggattgattcctcagaattttttcttaa 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)