Query= MSMg01no343_a03.b1 MSMg01no343_a03.b1 CHROMAT_FILE:
MSMg01no343_a03.b1 PHD_FILE: MSMg01no343_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:41 2005
(466 letters)
>mm_chr1_179370109_179370974
Length = 866
Score = 799 bits (413), Expect = 0.0
Identities = 448/467 (95%), Gaps = 13/467 (2%)
Strand = Plus / Minus
Query: 5 gaattcaagaggattaacggaaaaagatgtttatatttataaagccatgtttcaccaatt 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattcaagaggataaaaggaaaaagatgtttatatttataaagccatgtttcaccaatt 418
Query: 65 aaaagctaacaataaggggttaacaaacctcttgataaatagatataaagtacctgctaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaaagctaacaataaggggttaacaaacctcttgataaatagatataaagtacctgctaa 358
Query: 125 tgtcaggatatcaaatcataaatttgtaagaaaactgggattcagattatccatcaaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgtcaggatatcaaatcataaatttgtaagaaaactgggattcagattatccatcaaaac 298
Query: 185 ttagactcggttttatggcatccagaacgaaatcacagctctgacaacggttttacacag 244
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 297 ttagactcagttttatggcatccagaacgaaatcacagctctaacaacggttttacacag 238
Query: 245 tgtacctgctagcagagctaacagtcccagaga-------ttttttaagacactggtggg 297
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 237 tgtacctgctagcagagctaacagtcccagagacagacag------aagacactggtggg 184
Query: 298 tcgaaagtcataaatatggcttgctctattttggggctgttttccctgtgagccataact 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tcgaaagtcataaatatggcttgctctattttggggctgttttccctgtgagccataact 124
Query: 358 agtatccattttgagaacagaaaagtatgtccaggatatacagattaaatgaatatttaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 agtatccattttgagaacagaaaagtatgtccaggatatacagattaaatgaatatttaa 64
Query: 418 ggaagccagtctgtcacccctcactgctatgacagttatatccaagg 464
|||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 63 ggaagccagtctgtcacctctcactgctatgagagttatatccaagg 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_a03.g1 MSMg01no343_a03.g1 CHROMAT_FILE:
MSMg01no343_a03.g1 PHD_FILE: MSMg01no343_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:41 2005
(388 letters)
>mm_chr1_179199546_179200333
Length = 788
Score = 719 bits (372), Expect = 0.0
Identities = 384/388 (98%)
Strand = Plus / Plus
Query: 1 attgggagataaaaccattgtgaactgggcagaggtaagaaggcagaggaccaacaactg 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgggagatacaaccattgtgaactgggcagaggtaagaaggcagaggaccaacaactg 260
Query: 61 atcttgtgctaggttgatttcattatgaagacaaaatgaagagttttcatatccacttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttgtgctaggttgatttcattatgaagacaaaatgaagagttttcatatccacttca 320
Query: 121 aaagtatatattgatgtgtaaatattttctctcatttgcatatgtgctcacatgaatgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtatatattgatgtgtaaatattttctctcatttgcatatgtgctcacatgaatgat 380
Query: 181 atacagaatattacactatacagaataaaatatatttatgttagcaggtgttaaaggcac 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacagaatattacactatgcagaataaaatatatttatgttagcaggtgttaaaggcac 440
Query: 241 aaaattaatgtcttctctacatttgtatttttgtttgacaaatattgtgccaaaatttat 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 aaaattaatatcttctctacatttgtatttttgtttgacaaatattgtgccaaaattttt 500
Query: 301 ctatttttgtacattgttatttacattaatgttattaaatattttagagaatcttgccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatttttgtacattgttatttacattaatgttattaaatattttagagaatcttgccct 560
Query: 361 ggattgattcctcagaattttttcttaa 388
||||||||||||||||||||||||||||
Sbjct: 561 ggattgattcctcagaattttttcttaa 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
