BAC Information

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BAC

Clone NameMSMg01-343A14
Chromosome1 (Build37)
Map Location 102,635,255 - 102,635,489
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343A14.T7 (MSMg01no343_a14.b1)MSMg01-343A14.TJ (MSMg01no343_a14.g1)
ACCAG456444AG456445
length739823
length of high quality
(start - end)		427 (31 - 457)235 (64 - 298)
definitionCHROMAT_FILE: MSMg01no343_a14.b1 PHD_FILE: MSMg01no343_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:43 2005CHROMAT_FILE: MSMg01no343_a14.g1 PHD_FILE: MSMg01no343_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGACTCCTATAGTGCGAGGATCCGCGGAATTCTTGTTTAGT
TGCGTACCCCAAATTTTAATTGGGTTATTTTTTGTTTGGAGCCTAACTTC
TTGAATTCTTTATATATTTTTAATATTAACCCTCTGTCAGATGTAGTTTT
AGTGAAGTTCTTTTCTCAGTCTGTAGGATGCTGTTTTGTTCTACTGACCT
TGCCTTTACCTTAAAGAAGCTTTTCAGTTTCAAAAGGTCCCACTTATGAA
TTGTTGATCTTAAAGCGTGAGTAATTGGTGTTCTGTCCTGGAAACTTACC
TCTGTGCCATAGCATTTCAGGCTATTTCCCACATTTTCTTCTATTAGATT
TAGTGTATCTAGTTTTACATTGTCATCCTTGATCCACTTGGTGTTAAGTT
TTGAGCAAGGGGATAAATATCGATCTATATGCATTCTTCTACATGCAGAC
TGCCAGTTCGATCAGTACCATTTACTAAACATGAGTTCTTTTTGTCCACT
GCATGGTTTGCCGAATATAACATGTATAGGGTCTGGAGTTATACACGATT
TCTTTCTTTTTTGCCCTACTTTTTTTACCCCTTTTTTTCCTTCTCTTACT
TCCCCCTCCTTTTTCTCCCTTTAACTTTTTTCTTCTTTCCCATTTCTTAT
CTTCTCTCCTTTATTCTCTCCCCTTTGTATATCTTTTCTTTGCCTTTCCT
TTTTATGCTTTTTTCATTCTTTTTATTCTTCCTCCCTCT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACATCTTCTCTCCCCTCATTTACATTTTCACGTTTTT
GAGTGAGAGTCCCAATAAGGAAACTGGAATGAAATGTTGGGGGTAAAAAA
ATTGTTAGAAGATTTATTACCACCATGGAGAAACAAACAGGAACAGGAAC
ATAGATAAACTAACATCATAGGAGCTCTGAGGAGACTTCATTCCCCAGTG
CCAGAATGGACTGTCAGGTTTAGGGTTAGGGTTAGGGTTAGGGTTAGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
NNNNNNNNNNNNNNNNNNTTNTNTNNTNNNNNNNNTTTTTNTNNTTTTTT
TTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTT
TTTTTNTTNTNTTTTTTTTTTTTTTTNTTTTTTTTTTTTNNNNNTTTTTT
TTTTTTTNNTTNNTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTT
TTTTTTNNNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTT
NTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTT
TAGGTNTTTTTTTTTTTTNTTTTTNGTTTTNNTTTTTNTNTTNNTTTTNT
TNTGTTTTTTTTTGTTTTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_a14.g1 MSMg01no343_a14.g1 CHROMAT_FILE:
MSMg01no343_a14.g1 PHD_FILE: MSMg01no343_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:43 2005
         (235 letters)



>mm_chr1_102635055_102635689
          Length = 635

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatcttctctcccctcatttacattttcacgtttttgagtgagagtcccaataaggaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 acatcttctctcccctcatttacattttcacgtttttgagtgagagtctcaataaggaaa 260

                                                                       
Query: 61  ctggaatgaaatgttgggggtaaaaaaattgttagaagatttattaccaccatggagaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ctggaatgaaatgttgggggtaaaaaaattgttagaagatttattaccaccatggagaga 320

                                                                       
Query: 121 caaacaggaacaggaacatagataaactaacatcataggagctctgaggagacttcattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacaggaacaggaacatagataaactaacatcataggagctctgaggagacttcattc 380

                                                                  
Query: 181 cccagtgccagaatggactgtcaggtttagggttagggttagggttagggttagg 235
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagtgccagaatggactttcaggtttagggttagggttagggttagggttagg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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