BAC Information

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BAC

Clone NameMSMg01-343D19
Chromosome1 (Build37)
Map Location 105,558,760 - 105,559,144
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041067
Downstream geneLOC383546, LOC100041134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343D19.T7 (MSMg01no343_d19.b1)MSMg01-343D19.TJ (MSMg01no343_d19.g1)
ACCAG456596AG456597
length765795
length of high quality
(start - end)		529 (7 - 535)79 (63 - 141)
definitionCHROMAT_FILE: MSMg01no343_d19.b1 PHD_FILE: MSMg01no343_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:59 2005CHROMAT_FILE: MSMg01no343_d19.g1 PHD_FILE: MSMg01no343_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCCTATAGTGAGAGGATCCGCGGAATTCACATAACAAAT
CAACAAGGATTATAACAGTAGAAGGGAGAGCAAGTGGATTTCTCAGGCTG
CCACCTTTGTCTTCTTGGTGAGTTTCAGGCCTGACAGAAACGTTGGCTAA
AAAATACAAAGATTTGGCTTTTAAAAAAATGTTGCCCATGATTTTTCTAT
GTTCTTCACTTACATATATACTAATGTTTAATGTACTCTCACACACATGA
AACATGTACATACACACACACACACACACACACAAAGAGGGAGAGGGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGATACAGACAGAGACAGAGAGAGA
CACAGATACAGACATGCATGCACATGCACACACATGAACATGAAAAGAAC
ATATCCTGGAAAAGCAAAGCCATATGGCAAGTGAATATTCACTCAGGTAC
TGTTGAATTTATTGCAGAAAGGTTGATTGAAGAGGCATTTCAGCTTGAGG
CTGAAGCATAAGGAGCAGATTAAAATTATGGGAGAAATACAAATGAGGCT
GAAAATGTATCAAGCAGAGAGATCACGAAAGAAAAGCAGTTTTTCCAAAC
ATGATCTAAGAAGAAGTGGCTTTAATTGCCTGAACTGGATTTCCATAAAA
CAAAGGGGGAAAAAAGTTAAAAAATCCCCCCATCTCCTTTATAAATTATT
TTGAAACGATCTTAGGGTGGAGAAACCGTGAAAGTCTTTTTTTTTTTCTT
TGCCCGTGGGGAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTTTAGTTCTGTNCCCCATTTTTATTGAGTTATTTGGG
TTGTTGGTGTCTTAACTTTTTAAGGTTTTTTGTTGTTTTGTTTGTTTGTT
TGTTTTNNTTTTNNNTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTNTTT
TTNNNTTTTTTTTTTNTTTNTTTTTTTTTTTNTTTTTNNTTTTTNNTNTT
TTTTTTTTTTNTTTTTTTTTTTTTTTTTTTNTCCCCTTTTTTTTTTTTTC
CCTTTTTTTTTNTTTTCCCTCCCCCCCCTTTCTTCCCTTCCTCCCCCCCC
CCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCTCCTTCCCCCCTCCCCC
CCTCCCCCCCCCCCTCCACCCTCCCCCCCCTTCCCCCCCCCCCCTCCTTC
CCCCTCCCCCCCCCTCCCCCCCCCCCCCCTCCTTCTTCTCCCCCTTTTTC
TCCCCCCCCCCCCCCTTCCCCCCCTCCCCCCCCTTCCCCTTCCCCTCTCC
TCCCACCCCCCCACCCCCCCCTTCTCACATACCCACCATAACACTACCAC
ACACCAACAACCAAACCCAACACCCCCACCCACCATCAACAAACCACCCC
TTCACCACAACACCCAACACAACCAACAAATACACAAACCCCACCAACAC
AAACAAATTATACACCCCCACCTAACTAACCTCCACAACCACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_d19.b1 MSMg01no343_d19.b1 CHROMAT_FILE:
MSMg01no343_d19.b1 PHD_FILE: MSMg01no343_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:59 2005
         (529 letters)



>mm_chr1_105558216_105559144
          Length = 929

 Score =  629 bits (325), Expect = 0.0
 Identities = 362/387 (93%), Gaps = 22/387 (5%)
 Strand = Plus / Minus

                                                                       
Query: 163 ttttaaaaaaatgttgcccatgatttttctatgttcttcacttacatatatactaatgtt 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 ttttaaaaaaatgttgcccatgatttttctatgttcttcacttacatatatactaatgtt 870

                                                                       
Query: 223 taatgtactctcacacacatgaaacatgtacat----------------acacacacaca 266
           |||||||||||||||||||||||||||||||||                |||||||||||
Sbjct: 869 taatgtactctcacacacatgaaacatgtacatacacacacacacacacacacacacaca 810

                                                                       
Query: 267 cacacacacacaaagagggagagggagagagagagagagagagagag----agagagaga 322
           |||||||||||||||||||||||||||||||||||||||||||||||    |||||||| 
Sbjct: 809 cacacacacacaaagagggagagggagagagagagagagagagagagatacagagagag- 751

                                                                       
Query: 323 tacagacagagacagagagagacacagatacagacatgcatgcacatgcacacacatgaa 382
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 750 -acagagagagacagagagagacacagatacagacatgcatgcacatgcacacacatgta 692

                                                                       
Query: 383 catgaaaagaacatatcctggaaaagcaaagccatatggcaagtgaatattcactcaggt 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 catgaaaagaacatatcctggaaaagcaaagccatatggcaagtgaatattcactcaggt 632

                                                                       
Query: 443 actgttgaatttattgcagaaaggttgattgaagaggcatttcagcttgaggctgaagca 502
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 631 actgttgaatttattgcagaaaggttgattgaagaggcatttcagcttgaggatgaagca 572

                                      
Query: 503 taaggagcagattaaaattatgggaga 529
           |||||||||||||||||||||||||||
Sbjct: 571 taaggagcagattaaaattatgggaga 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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