BAC Information

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BAC

Clone NameMSMg01-343M21
Chromosome1 (Build37)
Map Location 182,775,239 - 182,775,690
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a
Downstream geneBC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343M21.T7 (MSMg01no343_m21.b1)MSMg01-343M21.TJ (MSMg01no343_m21.g1)
ACCAG457024AG457025
length770803
length of high quality
(start - end)		456 (52 - 507)393 (63 - 455)
definitionCHROMAT_FILE: MSMg01no343_m21.b1 PHD_FILE: MSMg01no343_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:46 2005CHROMAT_FILE: MSMg01no343_m21.g1 PHD_FILE: MSMg01no343_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATACGACTCACTATAGTTCGAGGATCCGCGGAATTCACAGAACTGTGTCC
TAGGAACCAGAGGACTACTATTCAGCTGAAGAAAATATCTGACACCCTCT
GTCACTTTCGCGCACGCGCACGAGCACGCACCCCCCCACACACACACACC
TGTTCACATGCATGGCCTTGAAGAGAATTATGAAACCCTGGCAGCTTCTT
TCGTTTTGCTCCCTGACCATGGAATACTGACTAAAGACCCTACAAACAAC
AGATCAGCCTGATCAATGGGGGCCCCAAAACCATGGACCAGAATGAGCCT
GTTCTCTTTATTAGTTGATTGCCTTAACTTCCCTGTCACTATGGTCTGCA
ACTGATGCCAACACACACACCATCCATAACTCTGTCCTAGTGATGGAGAC
CAATGCTGGTGAGCAGGTCTTGCCCTGTCTTCGGGTTTCTATTGCTGTGA
AGAGACACCATGACCATGGCAACTCTTAACAAGGAAACATTTAATCGACG
CTGGTTTACAGGTTCAGAGGTTTAGTCTATTATCATCGTGGTGGGAAACG
CGTTGCCATAAAGTGGTACTGTTGCTGAAAAAAGAACTTAGAACCGTATT
ATTATCTTGTTATCTTCCACAATAATAAAAAATCTTCGGGCCCGTGTCTT
GAAATATTGAAACTCCAAGTCCCCTCTCCCACGATAAAAATTTCTACTAA
TAGGACTTACATACTTTGATAAAGCGTCTATATTATACCCTTTCTTTTAA
ATTCTTTTATTCTTGGAATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGGGATACCCTGATCTACAGAGTGAGTCCCCCATCAGC
CAGAGCTACACAGAGAAACCCTGTCTCAAAAACCCTTTCTGTCAGCCAGG
CAGTGGTGGCTCATGCCTTTAATCCCAGCACTTGGGAGGCAGGAGGCAGA
GGGAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC
CAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAA
ACAAAACAACTTTCTGTCTTCCCGATTGTCTTCTTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTCCCTCCTTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTTTCTCCATCT
CAAAAAAAACTTTCTTTCTTCCTGTCTGGTCCCCTTTTATGTGTAGGGAT
GGTTTCCCGGTGTGGACATTAGGTTTCCAATTGTGATGTCTGGGGCCCCC
ACAATACCCCAAAAAGTTACTCTCAATCTTGGTTCCGCAATTTATGTAAA
CTTAACTGGGGCGGCTTGTTATTATAAATCCTTCTCCCTCTTATAGATAA
TTTTTTCTTGGTGCATCTCTTACCTTACTTTTTTCTTTTATCTAATATTT
TTCTTTCTTTTATGATATTTTTTTATTTCTCTTCTCTATCTTTTATACCT
CTATCTTTCCGTTATTCTTTATTCATCTGTTCTCTCTTATTTATGTTTTT
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_m21.b1 MSMg01no343_m21.b1 CHROMAT_FILE:
MSMg01no343_m21.b1 PHD_FILE: MSMg01no343_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:46 2005
         (456 letters)



>mm_chr1_182775117_182775968
          Length = 852

 Score =  824 bits (426), Expect = 0.0
 Identities = 448/456 (98%), Gaps = 4/456 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaccagaggactactattcagctgaagaaaatatctgacaccctctgtcactttcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aggaaccagaggactactattcagctgaagaaaatatctgacaccctctgtcactttcgc 515

                                                                       
Query: 61  gcacgcgcacgagcacgcacccccccacacacacacacctgttcacatgcatggccttga 120
           ||||||||||  |||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 514 gcacgcgcac--gcac-c-cccccccccacacacacacctgttcacatgcatggccttga 459

                                                                       
Query: 121 agagaattatgaaaccctggcagcttctttcgttttgctccctgaccatggaatactgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agagaattatgaaaccctggcagcttctttcgttttgctccctgaccatggaatactgac 399

                                                                       
Query: 181 taaagaccctacaaacaacagatcagcctgatcaatgggggccccaaaaccatggaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 398 taaagaccctacaaacaacagatcagcctgatcaatgggggccccaaaaccatggactag 339

                                                                       
Query: 241 aatgagcctgttctctttattagttgattgccttaacttccctgtcactatggtctgcaa 300
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 338 aatgagcctgttctctttatcagttgattgccttaacttccctgtcactatgatctgcaa 279

                                                                       
Query: 301 ctgatgccaacacacacaccatccataactctgtcctagtgatggagaccaatgctggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctgatgccaacacacacaccatccataactctgtcctagtgatggagaccaatgctggtg 219

                                                                       
Query: 361 agcaggtcttgccctgtcttcgggtttctattgctgtgaagagacaccatgaccatggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 agcaggtcttgccctgtcttcgggtttctattgctgtgaagagacaccatgaccatggca 159

                                               
Query: 421 actcttaacaaggaaacatttaatcgacgctggttt 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 158 actcttaacaaggaaacatttaatcgacgctggttt 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 852
Length adjustment: 10
Effective length of query: 446
Effective length of database: 842
Effective search space:   375532
Effective search space used:   375532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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