GGGACGAGGATGAAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAGAACCCTCATAAATGCTAAAATGGAGAGTTATTG
ACTCCATAAAGTTGTTCTCTGACTTTTATACACAATCACATTACATCATA
TCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCACACACACACACACACACACACACACACAAACACAT
ATCCAACTCCCTGACACCCCACATGCACCTAATATCAATCTATGCTTTCA
TGTGAACTGATAACTTATTTTCCTGTTTTATATCTGATACTTGATTCTTC
CAAAATTCTAATCATCCTATTTACACAAAGAAGAGAATTTCGTGCTTAAG
AATCAATGTTTGTTTTGTTATTATGAACATTCATGTGCATACTTCTTGTA
AACAGAACTAAGAGCTGTTCTACTGAGAAAAACACACATGCACACACAGG
AGAAGAGGGGTGAAGGGGAGGAATAACTGTGTTGTGAATTTATGCATTTT
AAAAAGTTAATGTTTCTTGAAAAAAAACATTCAGGGAAATCTACTATACA
GAAATACTGGGGGTTCTGGATGGCTAATAGGCTGGATTCTAATTAGGGGA
AAAATTTAAAAAGTAGGGGGAAACCTACTATGTCCTCTAGCTATTATGGG
ACCCTTTATAAGCTTCCCTGAGTTCTTGAGATTCCGGGTTGGAATGAGAT
A

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAATTGAGGAAACTGGAATTGTTGAG
AAGCACCTAAAGAAATGTTCAACATTCATAGTCAGTAGGGAAATGGAAAA
CAAAACAACCCTGAGATTGCACCTCACACCATTCAGAATGGCTAATATTG
AAAACTCAGATGACAGCAGATGCTGGTGAGGATGTGGTGAAAGAGCAAAA
GTCCTCTATTGCTTGTGGGATTGCAAGCTGGTATAACCACTCTGGAAATC
AATTTGTTGGTTCCTCAGAAAATTGGACATTAGTACTACCTGAGGACCCA
GCAATACCACTCCTGGGCATATACCCAGAAGATGCTCCAACTTGTAATAA
GAACACCTGATCTACTGTGTTCTTAGCAGCCATATTTATAATAGACAGAA
GCTGGAAACAACTCAGATGACCCTCAACAGAGGAATGGATACAGAAAATG
TAGTATATTTACACAGTGGAGTTCTATGAAGCTATTAAAACAAGGACTTT
ACAAAATTCTCAGGCAAATGGGTGGATCTAGAAAATATCCTGAGTGAGGT
AACTCAATCACAAAAGAAAATATATAGTATGTACTCATTGATAAGTTGGT
ATTAGGCATACTATGTGGATTACCCACAATACAACTCACAGACCTTATGA
AGATCAAGATAAAGACCANAGAGTGGATGCTTCA

Query= MSMg01no344_b04.b1 MSMg01no344_b04.b1 CHROMAT_FILE:
MSMg01no344_b04.b1 PHD_FILE: MSMg01no344_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:09 2005
         (439 letters)



>mm_chr1_124201935_124202773
          Length = 839

 Score =  789 bits (408), Expect = 0.0
 Identities = 430/444 (96%), Gaps = 12/444 (2%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttccagaaccctcataaatgctaaaatggagagttattgactccataaagttgttctctg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ttccagaaccctcataaatgctaaaatggagagttattgactccataaagttgttctctg 780

                                                                       
Query: 68  acttttatacacaatcacattacatcatatctctctctctctctctct----------ct 117
           ||||||||||||||||||||||||||||||||||||||||||||||||          ||
Sbjct: 779 acttttatacacaatcacattacatcatatctctctctctctctctctctccctctccct 720

                                                                       
Query: 118 ctcc--ctctctctctctctctctctctctctctctctctctctcacacacacacacaca 175
           ||||  ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 719 ctccctctctctctctctctctctctctctctctctctctctctctctcacacacacaca 660

                                                                       
Query: 176 cacacacacacacaaacacatatccaactccctgacaccccacatgcacctaatatcaat 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cacacacacacacaaacacatatccaactccctgacaccccacatgcacctaatatcaat 600

                                                                       
Query: 236 ctatgctttcatgtgaactgataacttattttcctgttttatatctgatacttgattctt 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctatgctttcatgtgaactgataacttattttcctgttttatatctgatacttgattctt 540

                                                                       
Query: 296 ccaaaattctaatcatcctatttacacaaagaagagaatttcgtgcttaagaatcaatgt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ccaaaattctaatcatcctatttacacaaagaagagaatttcgtgcttaagaatcaatgt 480

                                                                       
Query: 356 ttgttttgttattatgaacattcatgtgcatacttcttgtaaacagaactaagagctgtt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttgttttgttattatgaacattcatgtgcatacttcttgtaaacagaactaagagctgtt 420

                                   
Query: 416 ctactgagaaaaacacacatgcac 439
           ||||||||||||||||||||||||
Sbjct: 419 ctactgagaaaaacacacatgcac 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 16
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)