BAC Information

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BAC

Clone NameMSMg01-344B16
Chromosome1 (Build37)
Map Location 132,076,693 - 132,212,609
singlet/doubletdoublet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344B16.T7 (MSMg01no344_b16.b1)MSMg01-344B16.TJ (MSMg01no344_b16.g1)
ACCAG457249AG457250
length757763
length of high quality
(start - end)		554 (81 - 634)520 (69 - 588)
definitionCHROMAT_FILE: MSMg01no344_b16.b1 PHD_FILE: MSMg01no344_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:11 2005CHROMAT_FILE: MSMg01no344_b16.g1 PHD_FILE: MSMg01no344_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,212,056 - 132,212,609)(132,076,693 - 132,077,212)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGG
GGCGGAATTCATGTTTGTTTCTCTCAACCAGAGCTGAGTGTGAATCTAGA
GTTCAAAGCAAACATTTTAGGAGTAGAAGCAAACCCTCTTCCATTTTTAG
AATTCTACCAAGATCTCTTTGTATCTCCCTCAGACAATTCCAAGTCTCTC
TGACAGCTCACTGGATCGCTCTGCTCCTCCATTCAATTACATTTCCTCCA
TCTGCACTTGATTGTGAAAACTCTCTAATTATCAAGCACACATTTAATTA
AGCACCTTTTTAGTCACTTAGCATGAAGTTGTGAAAGTTGCAAGAGTGAA
AATCAGTCATATGAGACGAATAGCAAAAAGCATAATAGATCCACCTGTTC
AAAATTGGTGGAATTAAATGACTGTCTAGAGCATTAAATATTCTGTGGAG
CATCTTCTACTTTATTGTTTTTGCAAAATGGCTTTGGAGTCATCATTAAT
GCTCTCAGTAATTAATGAACACCAGATGGAAGATGGAACCGACAGGCCAC
ATCCATCAGGAAGTGTTTTCTCAGAGTTAAATGAGGCCGAACTCGGGAAG
TTTTCACCTCCCTCTAGTCTTGGTTTATTGAAGGCCCAAAGTTCCAATTT
TATGGACTGGGTGGGGGACCGAATGCATACCTTAGCCTCCTCAATATCCC
ATTACAGACACAATTCCTTTCCTCCATCTGTTTCTGTTGAAAAGAAAATA
TCCTTAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGACCTAAAAACTGATGTAAAGATGGACAGGA
TTTCAGATCTTTTGAAACATCAATCTTGAGAATAGTTTTATGTCTCTAGA
AATCTACATTGAAACAGCAGAAACCAGAGAGTGAATGGGGCAGGACAGAG
TTCTGTGTCATATAATGAAGACTTACACACACAAGGCAACAATTCTTCCC
TCTATTTCCAAGCCAAACTTTAACCAATAACTGACTCCTCCCTTATTATT
TTAGGTCGCATGAGCCGGACTCGATTTATCATTATGCCAACCCAAGGAGA
AGGTCGACAATGCCCCACAGAACTCACCCAGCAGAAACCCTGCCCAGTGA
CACCCTGCTATAGTTGGGTCCTTGGCAACTGGTCTGCATGTAAATTGGAG
GTAGGTCATGCCATGACACTTAGAGAATACTTCTCAGTCTGTGCAAAGCA
CTTGTCTCATCAAATACAGTGATTAAATAAATTGCACAGCACCAGGTTCT
GGGCACATGCTATTTTTAACATAACGGAGAACATAGGANAATGTAAGCAA
GTGAGTTAGTTTCACACAGGGTGACACTGCTAAGAGTCTAAACAGCCATT
CATTAGACACTGATTATAATAAGCTAGGTCACAAAACTGCCCATATCATC
AGCATCCTCAAGAAATCCGGGGTTTTTTGCCCCTTTGCTTGCTGAAGAAA
ATTAAGAAATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_b16.b1 MSMg01no344_b16.b1 CHROMAT_FILE:
MSMg01no344_b16.b1 PHD_FILE: MSMg01no344_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:11 2005
         (554 letters)



>mm_chr1_132211856_132212809
          Length = 954

 Score = 1056 bits (546), Expect = 0.0
 Identities = 552/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagctgagtgtgaatctagagttcaaagcaaacattttaggagtagaagcaaaccctctt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 754 gagctgagtgtgaatctagagttcaaagcaaacattttaggaggagaagtaaaccctctt 695

                                                                       
Query: 61  ccatttttagaattctaccaagatctctttgtatctccctcagacaattccaagtctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ccatttttagaattctaccaagatctctttgtatctccctcagacaattccaagtctctc 635

                                                                       
Query: 121 tgacagctcactggatcgctctgctcctccattcaattacatttcctccatctgcacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgacagctcactggatcgctctgctcctccattcaattacatttcctccatctgcacttg 575

                                                                       
Query: 181 attgtgaaaactctctaattatcaagcacacatttaattaagcacctttttagtcactta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 attgtgaaaactctctaattatcaagcacacatttaattaagcacctttttagtcactta 515

                                                                       
Query: 241 gcatgaagttgtgaaagttgcaagagtgaaaatcagtcatatgagacgaatagcaaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gcatgaagttgtgaaagttgcaagagtgaaaatcagtcatatgagacgaatagcaaaaag 455

                                                                       
Query: 301 cataatagatccacctgttcaaaattggtggaattaaatgactgtctagagcattaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cataatagatccacctgttcaaaattggtggaattaaatgactgtctagagcattaaata 395

                                                                       
Query: 361 ttctgtggagcatcttctactttattgtttttgcaaaatggctttggagtcatcattaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttctgtggagcatcttctactttattgtttttgcaaaatggctttggagtcatcattaat 335

                                                                       
Query: 421 gctctcagtaattaatgaacaccagatggaagatggaaccgacaggccacatccatcagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gctctcagtaattaatgaacaccagatggaagatggaaccgacaggccacatccatcagg 275

                                                                       
Query: 481 aagtgttttctcagagttaaatgaggccgaactcgggaagttttcacctccctctagtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aagtgttttctcagagttaaatgaggccgaactcgggaagttttcacctccctctagtct 215

                         
Query: 541 tggtttattgaagg 554
           ||||||||||||||
Sbjct: 214 tggtttattgaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_b16.g1 MSMg01no344_b16.g1 CHROMAT_FILE:
MSMg01no344_b16.g1 PHD_FILE: MSMg01no344_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:11 2005
         (520 letters)



>mm_chr1_132076493_132077412
          Length = 920

 Score =  951 bits (492), Expect = 0.0
 Identities = 513/520 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacctaaaaactgatgtaaagatggacaggatttcagatcttttgaaacatcaatcttg 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 agacctaaaaactgatgtaaagatgggcaggatttcagatcttttgaaacatcaatcttg 260

                                                                       
Query: 61  agaatagttttatgtctctagaaatctacattgaaacagcagaaaccagagagtgaatgg 120
           | |||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 261 acaatatttttatgtctctagaaatctacattgaaatggcagaaaccagagagtgaatgg 320

                                                                       
Query: 121 ggcaggacagagttctgtgtcatataatgaagacttacacacacaaggcaacaattcttc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ggcaggacagagttctgtgtcatataatgaagacttacacacataaggcaacaattcttc 380

                                                                       
Query: 181 cctctatttccaagccaaactttaaccaataactgactcctcccttattattttaggtcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctatttccaagccaaactttaaccaataactgactcctcccttattattttaggtcg 440

                                                                       
Query: 241 catgagccggactcgatttatcattatgccaacccaaggagaaggtcgacaatgccccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgagccggactcgatttatcattatgccaacccaaggagaaggtcgacaatgccccac 500

                                                                       
Query: 301 agaactcacccagcagaaaccctgcccagtgacaccctgctatagttgggtccttggcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaactcacccagcagaaaccctgcccagtgacaccctgctatagttgggtccttggcaa 560

                                                                       
Query: 361 ctggtctgcatgtaaattggaggtaggtcatgccatgacacttagagaatacttctcagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggtctgcatgtaaattggaggtaggtcatgccatgacacttagagaatacttctcagt 620

                                                                       
Query: 421 ctgtgcaaagcacttgtctcatcaaatacagtgattaaataaattgcacagcaccaggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 ctgtgcaaagcacttgtctcatcaaatacagtgattaaataaattacacagcaccaggtt 680

                                                   
Query: 481 ctgggcacatgctatttttaacataacggagaacatagga 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgggcacatgctatttttaacataacggagaacatagga 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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