GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGTCTGTATCCAATGATACCCAACTTGTAATAATTTGATTAAT
AGTTTACCAGGTTTGCAGTGGTTCAAAGGAGATATAGAAACTGTGGTGTG
TACTGTTAATCTGTTGACAGGTTAGCAATGTGTGGACTGATCTTATCCCT
CTGATTCTGTACAGGGGCAACAATCACGCTGGTAGACAGTCATGAGAAAA
CAATCACTCTCTAGTGAGAGGTGGTTACCACTTCAAGACATACCTCCTTG
CAAGCCAAGGCACATCTGTATTTTATAGCAAATATTTAGCTACTGTACAT
GTTTTCTTCATAGCAGCCCATTTTATGTAATCAGAATTTGTCCAGCATCA
TAATTTCAAGACTATGTAACAACTACATCTTTATTTATAAGGTGACCACA
GTCTTTCATAAGTTTAATATCTAAATAAAAATAAGCAGTTTCCATTTCTT
ACAGGCAAAAGGATATTTTCCCTTCAAATATATTTATTTTACTAAGTGAA
ATAACTTTAACAACTCCCCTGCACAGTTACCATTTTGTTTAATTATATTC
ATCATATTCCACAGTTCTGCAGATTTCCCTGGAGTAACACAGAGGACTCT
GTATTAATCTTTATAGAGAGCCAAGAAATAGCTTTCTCTCCAGTGTAATC
ACAATACTTTGATGAACGATACCCTGAAGATCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTACCTATTCTGTA
ACACTCAAATTTACTTCTAGTAGAGACAGTGAAAATAATTAGGCATTACA
ATTTACTTGAATAGAGCTAGAAATCTCAGGGCTAGTCTACATAGTAATTA
CTTAGGACAATAGCCGAGTCACACCCAAACACAGGAATACACAATGGGCT
AAGAAATAGGTGGGTTAAAGTATTATTTATGAAAGGATTAGTAGAACAGA
ATTCCTATGGTGCAGGTTTTTTCACTAGGCCCAGAGGAATTAGCATAATC
AGGTATTTACTAAAGAACCCCTGGTGGTGAGTTTAACAATAGACTAGCAT
TGTATCAGAGCATTCACCTGGCTCCTGTGTTTAGCCGATCTTAATTAGGG
TTGTTCCTATTCTCAGTTGTGAACAAGGCCTGGCTCCTGTCATCTTTTTA
TGTATGCATTTTCTTTATTTGGTGTAAGAACCAGTGTACCTTGTATTCGA
TAAGCCTTCTTCTTTTTCTTCTATATTAAAAGTCTGGTGGTTGCTTGTAG
AACTGACATCCAGATACAGCACTCCCTTGTGTCTGTGTTCGTCTGTCACT
TTTTTTTGTTCCCAACTTCCTGTGTGCCTGAAACGCTAACTCCATCTTTT
TTTTTTCCGTGGATTTGGGGGAGGTCCTC

Query= MSMg01no344_k06.b1 MSMg01no344_k06.b1 CHROMAT_FILE:
MSMg01no344_k06.b1 PHD_FILE: MSMg01no344_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:53 2005
         (589 letters)



>mm_chr1_8264359_8265347
          Length = 989

 Score = 1054 bits (545), Expect = 0.0
 Identities = 575/585 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgtctgtatccaatgatacccaacttgtaataatttgattaatagtttaccag 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaattcttgtctgaatgcaatgatacccaacttgtaataatttgattaatagtttaccag 730

                                                                       
Query: 65  gtttgcagtggttcaaaggagatatagaaactgtggtgtgtactgttaatctgttgacag 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 729 gtttgcagtggttcaaaggagatatagaaactgtggtgtctactgttaatctgttgacag 670

                                                                       
Query: 125 gttagcaatgtgtggactgatcttatccctctgattctgtacaggggcaacaatcacgct 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 669 gttagcaatgtgtggactgatcttatccctctgattctgtacaggggcaacactcactct 610

                                                                       
Query: 185 ggtagacagtcatgagaaaacaatcactctctagtgagaggtggttaccacttcaagaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggtagacagtcatgagaaaacaatcactctctagtgagaggtggttaccacttcaagaca 550

                                                                       
Query: 245 tacctccttgcaagccaaggcacatctgtattttatagcaaatatttagctactgtacat 304
           ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
Sbjct: 549 tacctccttgcaagccaaggcacatctgtatttgaaagcaaatatttagctactgtactt 490

                                                                       
Query: 305 gttttcttcatagcagcccattttatgtaatcagaatttgtccagcatcataatttcaag 364
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 489 gttttcttcatagcagcccattttatgtaatcagaatttgtccaacatcataatttcaag 430

                                                                       
Query: 365 actatgtaacaactacatctttatttataaggtgaccacagtctttcataagtttaatat 424
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 429 actatgtaacaactacatctttattcataaggtgaccacagtctttcataagtttaatat 370

                                                                       
Query: 425 ctaaataaaaataagcagtttccatttcttacaggcaaaaggatattttcccttcaaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctaaataaaaataagcagtttccatttcttacaggcaaaaggatattttcccttcaaata 310

                                                                       
Query: 485 tatttattttactaagtgaaataactttaacaactcccctgcacagttaccattttgttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tatttattttactaagtgaaataactttaacaactcccctgcacagttaccattttgttt 250

                                                        
Query: 545 aattatattcatcatattccacagttctgcagatttccctggagt 589
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aattatattcatcatattccacagttctgcagatttccctggagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)