BAC Information

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BAC

Clone NameMSMg01-344L21
Chromosome1 (Build37)
Map Location 91,459,507 - 91,607,892
singlet/doubletdoublet
Overlap geneCentg2
Upstream geneArl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneGbx2, Asb18, Iqca, Cxcr7, Cops8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344L21.T7 (MSMg01no344_l21.b1)MSMg01-344L21.TJ (MSMg01no344_l21.g1)
ACCAG457733AG457734
length758759
length of high quality
(start - end)		419 (36 - 454)506 (72 - 577)
definitionCHROMAT_FILE: MSMg01no344_l21.b1 PHD_FILE: MSMg01no344_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:01 2005CHROMAT_FILE: MSMg01no344_l21.g1 PHD_FILE: MSMg01no344_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,459,507 - 91,459,920)(91,607,387 - 91,607,892)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCGCGGAATTCACTG
CACAATTCCATACCTAAGGACATTGCAAGGTAGCCCTTTGCTGGTAAGCA
GCCAGCTGTTCCTCCACCCACTCCTTTCTCCGAGGCATCTGCATCTGTTA
GTTAAGAACATGTTCTCCATTGGCTCTGGGCAGGGGCTCTCACTGTGGCC
TGAGTGCTTTCAAGGCCTGGGGTCTTATAAACTCACATACTTGCCTCCTT
CCTGCTCTGTTCAGGGTTCCTTGGCACATTGGGCACAGGGGGAAAAAAAA
GGAAGAAGAAAAAGAAAGAAAAGAAGTACTAATTTTCTGAATAGGAAAAG
TGCGGTTTTCCAGATTACAAACCTGAGCTGAGCTTGAAGTGAGTGAAGGT
GCAGAAGAATGTGTTCACGGACAGTGTCCTGGGCAGAGCCGGGGGCATGC
TGCAGAAGTGAGGGCGGGGGCTGCAGCCATCTCAACTTGACCACCCGTCT
CTCATCGGGAGCTGAGCAAGGTCTGGCTCCCGCCGACATGGATAGAAAAC
TTCCCGAAAGAAATGCACAGGGCGGTTGGTTTTAAAAAAAAAAAAGGGGA
GTCTGCCTTCCCAAAGTTGGCGGTAAAAAACCCTTTTTTCACCCAAAGAA
ATCGCGTTGAAAATAGTAAAGATTCTCTGTTTTAAAATTAAAATTCTCTC
AAAAATTCTAAAATACAGCCTCCAATTGACCCTCATATATGATTATTTTT
CTCCTTTA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTATATCCCACCCTGAGCAGACAGCCAGG
TCAAGCTAAGCGATTCATCCGAAACTTGAAAATGTTCACGGATTAGAAGT
GGAATCAGAACCCAGAAGGCATACTGGATCTGCAGGTTGCTGCCCTCCGG
GCTGTGTGCACAGAGCTGCTGATGGACACTGAGGCACAGCAACTTTGAGT
GTTTGACCTCTACTGCACTAACTTGCTGTGGAAGACATGCACCTGCCAGA
TGACACACTCCTCTGACAAAGGGAAAAGGCACAAATACAGGCACAGAGGA
CTTTCAGAAGCATGGGACAGGGTCCTTGACAGTCCCTACTCTTCTGGGCA
ATTCTCTCATAGACTCTAGGGTCTTCTCCACTAGTTTCATGTGGAAACGC
CAGCAAGTAGGAGATCACACTAGACTGGGCTTAAGTACAGTCAGTGAGAT
CCCTGAGACCAGGCCTCAGAGAAACAAAACTACACACCACAATACACACG
CACACTCACACTCCCCTCACTTTACAGGGCTGTGACTACTCCCAAACTGC
CAATGGCAGTGGACACGTGCCTAAGCCTGTCTGGAACAAGGTAAAGAGAG
CCTAACCTAAGACACAGCACAGCCTGCGAATCAACCGAATGAGAAAAACG
GAAAACTTATTTCTTTGGAACATTCCTAAATGAACCCTAACAACGGAAAT
GGTTGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_l21.b1 MSMg01no344_l21.b1 CHROMAT_FILE:
MSMg01no344_l21.b1 PHD_FILE: MSMg01no344_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:01 2005
         (419 letters)



>mm_chr1_91459302_91460120
          Length = 819

 Score =  770 bits (398), Expect = 0.0
 Identities = 410/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcactgcacaattccatacctaaggacattgcaaggtagccctttgctggtaagca 65
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcactgcacaagggcatacctaaggacattgcaaggtagccctttgctggtaagca 265

                                                                       
Query: 66  gccagctgttcctccacccactcctttctccgaggcatctgcatctgttagttaagaaca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 266 gccagctgttcctccacccactcctttctccgaggcatctgcatctgttagttgagaaca 325

                                                                       
Query: 126 tgttctccattggctctgggcaggggctctcactgtggcctgagtgctttcaaggcctgg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgttctccattggctctgggcaggggctctcactgtggcctgagtgctttcaaggcctgg 385

                                                                       
Query: 186 ggtcttataaactcacatacttgcctccttcctgctctgttcagggttccttggcacatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggtcttataaactcacatacttgcctccttcctgctctgttcagggttccttggcacatt 445

                                                                       
Query: 246 gggcacagggggaaaaaaaaggaagaagaaaaagaaagaaaagaagtactaattttctga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gggcacagggggaaaaaaaaggaagaagaaaaagaaagaaaagaagtactaattttctga 505

                                                                       
Query: 306 ataggaaaagtgcggttttccagattacaaacctgagctgagcttgaagtgagtgaaggt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ataggaaaagtgcggttttccagattacaaacctgagctgagcttgaagtgagtgaaggt 565

                                                                 
Query: 366 gcagaagaatgtgttcacggacagtgtcctgggcagagccgggggcatgctgca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gcagaagaatgtgttcacggacagtgtcctgggcagagccgggggcatgctgca 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_l21.g1 MSMg01no344_l21.g1 CHROMAT_FILE:
MSMg01no344_l21.g1 PHD_FILE: MSMg01no344_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:01 2005
         (506 letters)



>mm_chr1_91607187_91608092
          Length = 906

 Score =  963 bits (498), Expect = 0.0
 Identities = 504/506 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatatcccaccctgagcagacagccaggtcaagctaagcgattcatccgaaacttgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctatatcccaccctgagcagacagccaggtcaagctaagcgattcatccgaaacttgaaa 647

                                                                       
Query: 61  atgttcacggattagaagtggaatcagaacccagaaggcatactggatctgcaggttgct 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 646 atgttcacggattagaagtggaatcagaacccagaaggcataccggatctgcaggttgct 587

                                                                       
Query: 121 gccctccgggctgtgtgcacagagctgctgatggacactgaggcacagcaactttgagtg 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gccctccgggctgtgtgcgcagagctgctgatggacactgaggcacagcaactttgagtg 527

                                                                       
Query: 181 tttgacctctactgcactaacttgctgtggaagacatgcacctgccagatgacacactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tttgacctctactgcactaacttgctgtggaagacatgcacctgccagatgacacactcc 467

                                                                       
Query: 241 tctgacaaagggaaaaggcacaaatacaggcacagaggactttcagaagcatgggacagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tctgacaaagggaaaaggcacaaatacaggcacagaggactttcagaagcatgggacagg 407

                                                                       
Query: 301 gtccttgacagtccctactcttctgggcaattctctcatagactctagggtcttctccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtccttgacagtccctactcttctgggcaattctctcatagactctagggtcttctccac 347

                                                                       
Query: 361 tagtttcatgtggaaacgccagcaagtaggagatcacactagactgggcttaagtacagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tagtttcatgtggaaacgccagcaagtaggagatcacactagactgggcttaagtacagt 287

                                                                       
Query: 421 cagtgagatccctgagaccaggcctcagagaaacaaaactacacaccacaatacacacgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cagtgagatccctgagaccaggcctcagagaaacaaaactacacaccacaatacacacgc 227

                                     
Query: 481 acactcacactcccctcactttacag 506
           ||||||||||||||||||||||||||
Sbjct: 226 acactcacactcccctcactttacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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