BAC Information

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BAC

Clone NameMSMg01-344N06
Chromosome1 (Build37)
Map Location 80,754,800 - 80,755,052
singlet/doubletsinglet
Overlap geneDock10
Upstream geneWdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneLOC665092, 9430031J16Rik, EG621020, LOC433328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344N06.T7 (MSMg01no344_n06.b1)MSMg01-344N06.TJ (MSMg01no344_n06.g1)
ACCAG457798AG457799
length764848
length of high quality
(start - end)
254 (73 - 326)126 (91 - 216)
definitionCHROMAT_FILE: MSMg01no344_n06.b1 PHD_FILE: MSMg01no344_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:08 2005CHROMAT_FILE: MSMg01no344_n06.g1 PHD_FILE: MSMg01no344_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTAGACGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCGGGGTGGACCACAAGCTAGCTCTCGTGCAGGGGCTCA
CAGGGCTGGCGACAAGGCCTGTCTGGGGTCCCTGGGCAAGCCCCGCCGTG
GCGCGAGGGACGCAGGGCACTCACCCGCTGCTGCTGACGGCTGCTGACGG
CCACCGCGGCGGCAGACGCTGCGCTGTGCCGGAGCTCGGCCGCCTGTCCC
GGTCTCAGCAGGCTCCGGGTGAACCTGCGGGTCCGCTCCCCGGCCATCGC
GGGCCGTGCCGCTCGCGCCTCGGCCCCTTATTGAGTGTGTCCCGCCGGTC
CCCTGGCCGCGCCAGCCTGTTCTACCCACCCGCCGTTCAGGAAGCGGAAC
TCAGAGCCTTTCCCCCCCTCTTCCCCGCTCAACTCACAAGAGGTGGGTTT
TTCTCGCGCGCACCCCCACTCTGCCCACCCCCTTTGCTCCCGTTCAAGCT
CCGCGGCGACTTTGCAAACTCTGTGCCTCTCCGGCGGTGCGTTCAACTCT
GCCTGATTAGGACGCATCTGCATATTTTCTTTTGAAGTTCTTACTTATAT
TCATGCCGTTTAACCCTTTTTATCTTTTTTATTCCAACTTTTCATCTTCT
AGCTTTCAACTGTTAATTTTTTTATATGTACCCCCATAATAATATATCCT
TTTATTTTTACTTATCTTACAAACTCTTCTTATATTATATTATTCCTCTC
ACTTTCTTTTTATT
ATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTTTCTACAGGAAATTAGAAAGCTCTGA
TACTTCTGAGCTTAAGCAATCCTTCTGAGTAATAAAATCCTATGCACACT
CCCTCACATCTAAATGTGATGCACGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTCCCTACGCATTGTTTACAATATATCAGCAT
AGATCAGTAATCAGATAAAATAATATTACATCCTCAACACTTAATTATAA
CTAATTTCTTATTTTTATATTAATCTTAATTTTTAAATAGTTTTTTTATA
TATATTTTCGTTTTTTATTTTTCTTAAACCGCCCCTTTTTTTATTACTAT
TTGTTTTTTTTTTTTACCCCTCTTCTTATTTATTTTTTTCTATATATTTC
ACACCTTCATACTTTTTATTTATTTTATCTTTATTATATTTTTATTATTA
TTTTTAAAACCTTTTTTTCTCTCTATACATAAATCTGTCTATCAATTATA
TTTATATATTTTTTTTTTCTTTATTTTCATATTCCTTACTATGTCACTCT
ATCTATATCTTTATTTTTTCTTCTTTCTTTTTGTTGCTCTTCTGTCTCTA
CTACTTTTTTCCTCTTTTTATTTATCTCGCTTTTTTATTCTCTTACTTTC
TCTCACTATTTTTCTTCTATGTTTATTTTTTCCTCTAACTCATACCTCTA
TTAATATTTCAATAATTTATATTCTTTCTACCAATTTTATATTCATACAT
TATCTCCCTCTCTCTCCTCTTTTTTTCCTTTTTTACCNTTATCATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_n06.b1 MSMg01no344_n06.b1 CHROMAT_FILE:
MSMg01no344_n06.b1 PHD_FILE: MSMg01no344_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:08 2005
         (254 letters)



>mm_chr1_80754599_80755252
          Length = 654

 Score =  474 bits (245), Expect = e-138
 Identities = 251/253 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   acaagctagctctcgtgcaggggctcacagggctggcgacaaggcctgtctggggtccct 61
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acaagctagctcccgtgcaggggctcacagggctggcgacaaggcctgtctggggtccct 261

                                                                       
Query: 62  gggcaagccccgccgtggcgcgagggacgcagggcactcacccgctgctgctgacggctg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gggcaagccccgccgtggcgcgagggacgcagggcactcacccgctgctgctgacggctg 321

                                                                       
Query: 122 ctgacggccaccgcggcggcagacgctgcgctgtgccggagctcggccgcctgtcccggt 181
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 322 ctgacggccaccgcggcggcagacgcggcgctgtgccggagctcggccgcctgtcccggt 381

                                                                       
Query: 182 ctcagcaggctccgggtgaacctgcgggtccgctccccggccatcgcgggccgtgccgct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcagcaggctccgggtgaacctgcgggtccgctccccggccatcgcgggccgtgccgct 441

                        
Query: 242 cgcgcctcggccc 254
           |||||||||||||
Sbjct: 442 cgcgcctcggccc 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)