Query= MSMg01no345_i01.b1 MSMg01no345_i01.b1 CHROMAT_FILE:
MSMg01no345_i01.b1 PHD_FILE: MSMg01no345_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:58 2005
(460 letters)
>mm_chr1_187313212_187314071
Length = 860
Score = 758 bits (392), Expect = 0.0
Identities = 438/462 (94%), Gaps = 18/462 (3%)
Strand = Plus / Plus
Query: 5 gaattcccacatactttctcgagtttcccagaattccctctgctattgttttttttt--- 61
||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct: 203 gaattcccacatacttt-t-gagtttcccagaattccttctgctattgtttttttttttt 260
Query: 62 -aatttttattttttagctccattccactgtagctggaaaaaacaagatgctatttcaat 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatttttattttttagcttcattccactgtagctggaaaaaacaagatgctatttcaat 320
Query: 121 tttcttaatttgttctatatttatttgtctgttaggactattttgcctacactctttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttaatttgttctatatttatttgtctgttaggactattttgcctacactctttctc 380
Query: 181 aagaccaccatttccttgctatttttttctgcctcaatatttcatccactgaaattggag 240
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aagaccatcatttccttgctatttttttctgcctcaatatttcatccattgaaattggag 440
Query: 241 tctcccactattattgtattgctgtctctctctcctatcaatggtatgtttaggttgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcccactattattgtattgctgtctctctctcctatcaatggtatgtttaggttgtgt 500
Query: 301 gatgctgggtggatatatgtcttatatttgtttcatcttcctagtcagttgaccatttaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgctgggtggatatatgttttatatttgtttcatcttcctagtcagttgaccatttaa 560
Query: 361 tattgcgtgacataaagaagtcatgcgctacacagaaatcattataggaaagtaagccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattgcgtgacataaagaagtcatgcgctacacagaaatcattataggaaagtaagccct 620
Query: 421 --cccccccccccccccgtgctatcctcctgattgctttgtg 460
||||| || ||||||||||||||||||||||
Sbjct: 621 ttccccc----------gtactatcctcctgattgctttgtg 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_i01.g1 MSMg01no345_i01.g1 CHROMAT_FILE:
MSMg01no345_i01.g1 PHD_FILE: MSMg01no345_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:58 2005
(423 letters)
>mm_chr1_187511471_187512295
Length = 825
Score = 750 bits (388), Expect = 0.0
Identities = 412/421 (97%), Gaps = 2/421 (0%)
Strand = Plus / Minus
Query: 5 aggcatattaacgccctctattattctgtcttaatctttccatttccccttaaatcacca 64
|||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 625 aggcgtattaccgccctctattattctgttttaatctttccatttccccttaaatcacca 566
Query: 65 agagttattctaagtcagctctctgtttctagaactaagaaatggtttccatctttgacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agagttattctaagtcagctctctgtttctagaactaagaaatggtttccatctttgacc 506
Query: 125 aattttatgagaaagattgtcttgagccttgattttgcattttgggttg--ttttttggt 182
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 aattttatgagaaagattgtcttgagccttgattttgcattttgggttgttttttttggt 446
Query: 183 ttcagtgacccctgcgggcatttaaaacatatactttagttcctcacagtccaaatactt 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcagtgacccctgcgggcatttaaaacatatactttagttcctcacagtccaaatactt 386
Query: 243 tttaaggggtaatttctgcctactaatgttgcctagcaacataggaagcatgccacctta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttaaggggtaatttctgcctactaatgttgcctagcaacataggaagcatgccacctta 326
Query: 303 tagagatgttgactganagtctgggcatcgcagtgaagagaaaattccagcactatatct 362
|||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 325 tagagatgttgactgaaagtctgggcatcgaagtgaagagaaaattccagcaccatatct 266
Query: 363 gatgggctgtgtacaccagctccttggatttggctctgtgagttatgagaacataccaga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgggctgtgtacaccagctccttggatttggctctgtgagttatgagaacataccaga 206
Query: 423 a 423
|
Sbjct: 205 a 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 825
Length adjustment: 9
Effective length of query: 414
Effective length of database: 816
Effective search space: 337824
Effective search space used: 337824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
