NTTTTCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGTCTTTAAGTTTTAGAAAGATGGATTTTAGCCTGG
AGGGGAGAAAGATTCATTACTAAAAAAGAATATGAAAAACAAGCTGGGAC
TGTCTAAAAAGTTCAGGACTGTCAGAATAACTTTGTTCAATTATTTGATA
TTATACATGAAAAATGAAAAAGTGCACCATATAATTTTTGCTCTAGATAA
TCTACAAAAGACAGACTGCCTTGGGTTGCCAGGAACCAAGCATGGTAATT
AAGCAACTGATTTAGAAAGCAGAGAAGGAATTCTTGTAACTATTCAACAC
AAAACAGATCTTACAACATAGAATTATTTCCATCTTGCCCTTTACATGAC
AACGTGCTTAGTCCAGAGCCCTGTCAACTCATATAGAATTTTCAACCAGT
CACCATTTCCCTCCAAGGTGAATAGGTTTGTAATTTATACTTGGGCTTTA
TGAAAATTCTGTCATAAAATACATGGACATATGCTATCAAAATCAGGCAG
TATATTTGTTTCTCTCAGAGTGACTTCAATGGAGTCGAGTAACATTGCTC
CACCTACTGCATCGTTAAGGTCTGTGAGTTTGTTTAGTTATGAATGCTTT
TGTGTGTCTTTTGGTTTTAAAAACCTGGCTAAAATTATGCATTGTATTTA
AAAATGGATTTGAAGTGTTTTCCTGGTGTCACTTTGGATTAN

NNNNNCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGCAAGAAATGGA
CGTGGATGCATTCCTAGTAAATGAACTAGAGAACTTATTCATATTTCATC
AATTTTTCCCACTTATGTTCTTTTCCTTTCCCAAGATCAGATCTAAGATC
TTACTTGACATTTGGGTCACTTTCCCTTAGTCCCAAACCTAGTTCTTTGG
ATGGCGGGAAAGGCGTCTTACGGGCAGTTCTGGTTCCGAATTGATTTCAC
TGATGCCATGGAAAATCTAGGCTTGTTCTTTTTTTTGAAGAAAGCTGTTA
TTTCTACGTTCAGTTTGCTGTCCATTTTTAATCTCATCTAACATTCTTGA
GATTTTGGAAGGTAACTTGATTGTACCACCTGAAATCTCTTATTTTCCTT
TTGACCTCTTAAAAATTGCCATTACCTGAGAACCTCAACTCATGATAAGC
AAAGGAAGTTTCTGGAAAGAACAGATTTTTATATTCTGAACCTGTGCCAG
GAAAGAGTTTTAGGATGTTTGGTGGGTGTGCACTGAACTGACGAGGGTCC
TGGGAAAGTAGTTCTTATTTGGAGGAAACCTGATCTACCCAGCCCTATGA
TTGCTCTTTCGCGTACTGTTTTTTTTAGTCAGTTAATGACTCTGTGTCAT
TGCTGGTTTTATGACCTTCCGTTCCCTTTATTN

Query= MSMg01no345_j13.b1 MSMg01no345_j13.b1 CHROMAT_FILE:
MSMg01no345_j13.b1 PHD_FILE: MSMg01no345_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:05 2005
         (600 letters)



>mm_chr1_12515903_12516903
          Length = 1001

 Score = 1139 bits (589), Expect = 0.0
 Identities = 595/597 (99%), Gaps = 1/597 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtctttaagttttagaaagatggattttagcctggaggggagaaagattcatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaattcagtctttaagttttagaaagatggattttagcctggaggggagaaagattcatt 742

                                                                       
Query: 65  actaaaaaagaatatgaaaaacaagctgggactgtctaaaaagttcaggactgtcagaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actaaaaaagaatatgaaaaacaagctgggactgtctaaaaagttcaggactgtcagaat 682

                                                                       
Query: 125 aactttgttcaattatttgatattatacatgaaaaatgaaaaagtgcaccatataatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactttgttcaattatttgatattatacatgaaaaatgaaaaagtgcaccatataatttt 622

                                                                       
Query: 185 tgctctagataatctacaaaagacagactgccttgggttgccaggaaccaagcatggtaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctctagataatctacaaaagacagactgccttgggttgccaggaaccaagcatggtaa 562

                                                                       
Query: 245 ttaagcaactgatttagaaagcagagaaggaattcttgtaactattcaacacaaaacaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaagcaactgatttagaaagcagagaaggaattcttgtaactattcaacacaaaacaga 502

                                                                       
Query: 305 tcttacaacatagaattatttccatcttgccctttacatgacaacgtgcttagtccagag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttacaacatagaattatttccatcttgccctttacatgacaacgtgcttagtccagag 442

                                                                       
Query: 365 ccctgtcaactcatatagaattttcaaccagtcaccatttccctccaaggtgaataggtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgtcaactcatatagaattttcaaccagtcaccatttccctccaaggtgaataggtt 382

                                                                       
Query: 425 tgtaatttatacttgggctttatgaaaattctgtcataaaatacatggacatatgctatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaatttatacttgggctttatgaaaattctgtcataaaatacatggacatatgctatc 322

                                                                       
Query: 485 aaaatcaggcagtatatttgtttctctcagagtgacttcaatggagtcgagtaacattgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatcaggcagtatatttgtttctctcagagtgacttcaatggagtcgagtaacattgc 262

                                                                    
Query: 545 tccacctactgcatcgtt-aaggtctgtgagtttgtttagttatgaatgcttttgtg 600
           ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccacctactgcatcctttaaggtctgtgagtttgtttagttatgaatgcttttgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space:   584690
Effective search space used:   584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)