NNTTTTTTTTNNCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCG
AGGATCCGCGGAATTCCTGTCCTGACTTCCTTCAAAGATGAATAGCATTA
TAGAAATGTAAGCCAAATAAACCCTTTCCATCCCAACTTGCTTTTTGGTC
ATGGTATAATGCTGAAATAGAAACCATAACTACGATAGCTTTTGCTTTGA
CTTCCTAGCTCTGCTTAGTCCTCTCAGTTGCCTAGAATTGAATGGAGATC
TGACTCTTCTATGCCTCCAGGCACAGGATCTTATGTTGTAGCTTTCATTT
TCATTATTCCTCTTTGTAATTCTTCCTGAATATATCTGTAGTAACAACAA
CAATTACAGATAATAAATACTTTCTCTTTTAAAAAGTTTGATTTTTAAAT
AGAGAGTGGGGGCACACCCCTTTAATCTCAACAGCAGGGAGGAAGAGCCC
CCTTCTCCCACTCTAGTTCCATTACATGGAATTTCAATTTCTTTCTTTCG
GCAGATGCAGGGTTTCCTTAGNTCTGTCCCAACCTCTTCCCCAGCACCCC
CTACTAGNTCATCTCCATCCCTTTGTATCATCTGCTCACGGAAAAACCAC
TTCTGTCAGGGACCTCTGGGGGTCACATTAGGTAGGGATTTTTCACCACC
CTCTTGGCCTTCATTTTGGCCCCCCCAAATTAACCATTGGCTATGGGAGG
CCCCCCCCAGGAAGCCCTAAATCCCCCCCCCCCCAAATCCCTTGGAAACC
ACCCGGGGAGGG

NNCCGAGAGGGCGCTGGGGCCGGCTCAATACGGACTATAAGATTCCGAAT
CCATAGCTGACCTATTCTGAGTCATGAGATGAATATTTCACTAAAATCGA
AAACCTGACATCAACATTTACCGATATATAATAGAACTGAAAAGCAGTAC
AATCTTCTCTCCAATGGTTTTGCTCAAAATGGCCATCCCTTATAAAATGA
AAAAACTTCCCCCCCTTTAATAAAAAACCCCGGGCCGGGAAAAAATCCCT
ATTCTCCCCCCCTTTGGCAACGCTTTTTTTCCCGGGGGTTTTTTAACACC
CCCCCCGGGAACCTTTTAAAAAAAAACTCCCCTTTTTTTCTCCCCCCCTC
TTTTCCCCCCCCCTTTTTCTCCCCCTTTTCCCCCCCCCCCGGCNCCCCCT
TCCCCCTCTTTAAAAAAAAATTTTTTTTTTTTTCTTAAAAATAACTTTTC
TTTTCTTTTTTTATTCTTTTCCCCCCTCTCCCCCTTTCTTATTTCCTCTT
TNTTTCTTTTCCACAACAAACAATATAACACTTCCCCCCCTTCCCTTCTT
CTTCCCCTACCCAAAGAGGAAAGGG

Query= MSMg01no345_k24.b1 MSMg01no345_k24.b1 CHROMAT_FILE:
MSMg01no345_k24.b1 PHD_FILE: MSMg01no345_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:11 2005
         (444 letters)



>mm_chr1_35503624_35504467
          Length = 844

 Score =  748 bits (387), Expect = 0.0
 Identities = 423/435 (97%)
 Strand = Plus / Plus

                                                                       
Query: 9   ttcctgtcctgacttccttcaaagatgaatagcattatagaaatgtaagccaaataaacc 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttcctgtcctgacttccttcaaagatgaatagcattatagaaatgtaagccaaataaacc 268

                                                                       
Query: 69  ctttccatcccaacttgctttttggtcatggtataatgctgaaatagaaaccataactac 128
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 269 ctttccatcccaacttggtttttggtcatggtataacgctgaaatagaaaccataactaa 328

                                                                       
Query: 129 gatagcttttgctttgacttcctagctctgcttagtcctctcagttgcctagaattgaat 188
           || |||||| |||||| |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 329 gacagctttggctttggcttcctagctctgcttagtcctctcagttgtctagagttgaat 388

                                                                       
Query: 189 ggagatctgactcttctatgcctccaggcacaggatcttatgttgtagctttcattttca 248
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 389 ggagatctgactcttctatgcctccaggcacaggatcttatgttgttgctttcattttca 448

                                                                       
Query: 249 ttattcctctttgtaattcttcctgaatatatctgtagtaacaacaacaattacagataa 308
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 449 ttattcctctttgtaattcttcctgaatatatcagtagcaacaacaacaattacagataa 508

                                                                       
Query: 309 taaatactttctcttttaaaaagtttgatttttaaatagagagtgggggcacaccccttt 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 taaatactttctcttttaaaaagtttgatttttaaatagagagtgggggcacaccccttt 568

                                                                       
Query: 369 aatctcaacagcagggaggaagagcccccttctcccactctagttccattacatggaatt 428
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aatctcaacagcagggaggcagagcccccttctcccactctagttccattacatggaatt 628

                          
Query: 429 tcaatttctttcttt 443
           |||||||||||||||
Sbjct: 629 tcaatttctttcttt 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)