BAC Information

Click to search

BAC

Clone NameMSMg01-345M02
Chromosome1 (Build37)
Map Location 38,521,826 - 38,522,335
singlet/doubletsinglet
Overlap geneAff3
Upstream geneMgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123
Downstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345M02.T7 (MSMg01no345_m02.b1)MSMg01-345M02.TJ (MSMg01no345_m02.g1)
ACCAG458503AG458504
length747762
length of high quality
(start - end)
516 (53 - 568)353 (88 - 440)
definitionCHROMAT_FILE: MSMg01no345_m02.b1 PHD_FILE: MSMg01no345_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:16 2005CHROMAT_FILE: MSMg01no345_m02.g1 PHD_FILE: MSMg01no345_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGAGAGGCTAAGATTGGCGGGGCGCTAGTACGACTCCTATATTCAGAGG
ATCCGCGGAATTCAGCCATGCTGAGGGACTGTGATTCTGGCTTCTGTTCA
TCCAGCAGAGCGACTCTGAGATCCCCTCATATTGTTGTATAAACACATGA
CGTCCACGCTGAGACATGTAGTTCATATAATGCATTAGCTGACCCATTGA
TGGAGACTTGAACTTTGCTATTTTGGAGATATTGGGAATCAAATGGATGA
TGACATTGTGCTGCAAGCCTATAGACAGATGTGTACTTTGATTCTTTAAT
AAATGCCTAGTGAGTTGATGCTTATAAAGTATTTAAACACTGGAAAAGCA
TGTTCCAGTGATTTTAATATTTTACAGTTTACCAGCAGGTGAGACGTGTT
CTGAGCACCCTGCATTCTGTGACATTGCCCATTTTCACTTAATCAATCTT
GTGGGTGGATACTGGTGTCTATCGTTCGGCAGGGGTGACGGTGAAGGTCT
TTTATACTGTTGGATGGCCACAGTTTACCTTCATTGTAAAGTGCCTCTTT
GGGTTTTTATCTTTGGCGTGTGTCTCTGTGTGTGCGTATGTGTGTGCTCC
CTTTAACTTTTCTATTCCTTTGTCCTTATTTTCTTCTTTTTGTTCTCTTT
ATGTTTCTACACATCTTTTAAATTTTCTTTTCACTTTCACTTCCTTATTA
CCGTCGTTCCCCCAACGTTCCTTTAGCACTACACTTTTATTTTCATG
TTTTTNCTCGATGAAGTGGCGAGGCCGGGGGGGCGGCTGGTCTCCGAGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTCGTCCGAGGCTCGGGGAG
CATCGGGGAAGACAGGGAGGAAAGAATATCAAACTGGATGGCAGGGAGTA
GGCAGTCAAGCACTACCTTCCGGGTGTAAGCTACCAGTCACAAACCCACG
ATCCTGCAGCAGCTACAGTAGCCTAAACTGGGAAGGCATGAGAACGGGCC
TGCCAACAGCCAGTCATGGGTTAGGAAGGACTCAAGGGGCCTCATCCTTT
CCCTGATGAACTGGTGGCAAGGGATGGACTCTAGGGGGAAGGGGACATCA
GCACTGTCTTCAGTTGAGTCAAAAAGTGAGCCCACCATGGTGCAAGGCAG
AATAAACAGAATACAGTATCTACATGCATAGACCTGTCGATTATAAGAGT
GGGGGAGTCACAATTTTGTGACTATACAAGAGTATACTTTGGACCCTATT
AGGACAAGTTAATCTAATTAATGTTGACTATTTAATTTAAATTATCTTAT
GTATACCCCACTGTCTGTTGTCTTGTTTATGACATAGGAAAATACAGTGT
CGCATTCATTCCTTCTGGAGTGCCTCTTGTTACCATATGATTAACCACAC
ACTCTCTAAAATTCTGGTCCTCTTTTCTTTGATATTAACCTTGATTGATG
ATGCGCTTATTCCATTGGTTACACCATTTCATCCTTAGACATCCTCTGAC
TAATTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_m02.b1 MSMg01no345_m02.b1 CHROMAT_FILE:
MSMg01no345_m02.b1 PHD_FILE: MSMg01no345_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:16 2005
         (516 letters)



>mm_chr1_38521622_38522537
          Length = 916

 Score =  971 bits (502), Expect = 0.0
 Identities = 508/510 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcagccatgctgagggactgtgattctggcttctgttcatccagcagagcgactc 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 714 ggaattcagccatgctgagggactgtgcttctggcttctgttcatccagcagagcgactc 655

                                                                       
Query: 65  tgagatcccctcatattgttgtataaacacatgacgtccacgctgagacatgtagttcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgagatcccctcatattgttgtataaacacatgacgtccacgctgagacatgtagttcat 595

                                                                       
Query: 125 ataatgcattagctgacccattgatggagacttgaactttgctattttggagatattggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ataatgcattagctgacccattgatggagacttgaactttgctattttggagatattggg 535

                                                                       
Query: 185 aatcaaatggatgatgacattgtgctgcaagcctatagacagatgtgtactttgattctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aatcaaatggatgatgacattgtgctgcaagcctatagacagatgtgtactttgattctt 475

                                                                       
Query: 245 taataaatgcctagtgagttgatgcttataaagtatttaaacactggaaaagcatgttcc 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 taataaatgcctagtgaattgatgcttataaagtatttaaacactggaaaagcatgttcc 415

                                                                       
Query: 305 agtgattttaatattttacagtttaccagcaggtgagacgtgttctgagcaccctgcatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agtgattttaatattttacagtttaccagcaggtgagacgtgttctgagcaccctgcatt 355

                                                                       
Query: 365 ctgtgacattgcccattttcacttaatcaatcttgtgggtggatactggtgtctatcgtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctgtgacattgcccattttcacttaatcaatcttgtgggtggatactggtgtctatcgtt 295

                                                                       
Query: 425 cggcaggggtgacggtgaaggtcttttatactgttggatggccacagtttaccttcattg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cggcaggggtgacggtgaaggtcttttatactgttggatggccacagtttaccttcattg 235

                                         
Query: 485 taaagtgcctctttgggtttttatctttgg 514
           ||||||||||||||||||||||||||||||
Sbjct: 234 taaagtgcctctttgggtttttatctttgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)