Query= MSMg01no345_m11.b1 MSMg01no345_m11.b1 CHROMAT_FILE:
MSMg01no345_m11.b1 PHD_FILE: MSMg01no345_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:18 2005
(568 letters)
>mm_chr1_20834993_20835960
Length = 968
Score = 992 bits (513), Expect = 0.0
Identities = 552/565 (97%), Gaps = 2/565 (0%)
Strand = Plus / Minus
Query: 5 gaattcctcacagcagcttcagtgatggatgatttttgtgggggaggtcatctctttgaa 64
||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||
Sbjct: 768 gaattcctcacagcagctttagtgatggatgatttttgt-ggggaggtcaactctttgaa 710
Query: 65 ccttggatatgcacaagtaaattgggtgcctatgtatcactgggagtgttaaattgcgtt 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ccttggatatacacaagtaaattgggtgcctatgtatcactgggagtgttaaattgcgtt 650
Query: 125 tgttaatacgagatctagtatatatacattatttaaaatgtcctgtagtttcaaatttgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgttaatacgagatctagtatatatacattatttaaaatgtcctgtagtttcaaatttgt 590
Query: 185 taagatttatgagatgggcgatgtgttcgtacttgaattaaatatgaaagattggttttg 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 589 taagatttatgagatgggcgatgtgttcgtacttgaattaactatgaaagattggttttg 530
Query: 245 gattagatttgaaagatctatcatgtcaactttatttaacccttacaaccaccacggcca 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 529 gattagatttgaaagatctatcatgtcaactttatttaacccttacaaccaccagggcca 470
Query: 305 caacgtcctgtttttataggcaacaatgctttatcccttaagggcacaccaggggcaata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 caacgtcctgtttttataggcaacaatgctttatcccttaagggcacaccaggggcaata 410
Query: 365 aactgtccctttgtcagccagaacatttttttcccc-taggtaattctacgtgcaaggac 423
||||||||||||||||||||||||||||||| |||| ||||||||||||| || ||||||
Sbjct: 409 aactgtccctttgtcagccagaacattttttcccccctaggtaattctacttgtaaggac 350
Query: 424 ggagcttaaaattcctcagaaatgtcagcactacaatatggacgctaagctgggctatca 483
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 349 ggagcttaaaattcctcagaaatgtcagcactacaatatggacgctaagcccggctatca 290
Query: 484 gactctaggaacattttatggtttgccaaacactttaaagataaatcccattgtgactaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gactctaggaacattttatggtttgccaaacactttaaagataaatcccattgtgactaa 230
Query: 544 gttagctggaggcattgtctggtgt 568
|||||| ||||||||||||||||||
Sbjct: 229 gttagcaggaggcattgtctggtgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_m11.g1 MSMg01no345_m11.g1 CHROMAT_FILE:
MSMg01no345_m11.g1 PHD_FILE: MSMg01no345_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:18 2005
(473 letters)
>mm_chr1_20781123_20781995
Length = 873
Score = 868 bits (449), Expect = 0.0
Identities = 467/473 (98%)
Strand = Plus / Plus
Query: 1 aagcccagcacttccgactctgaggccatagcaccatgagttctgggctagcttgggtga 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 aagcccagcacttccgactctgaggccataccaccatgagttctgggctagcttgggtga 260
Query: 61 cataaagaaaccagcaaacaaaagtaaatgcattgggttcacggaatgcgagacattttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataaagaaaccagcaaacaaaagtaaatgcattgggttcacggaatgcgagacattttc 320
Query: 121 ttaagctgaaaaactgagactcaaatgtccttgtaagtctgttgggtaagactagagaac 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagctgaaaaactgagactcaaatgtccttgtaagtctgttgggtaagactagagaac 380
Query: 181 tcttaaacttcctgtgcatctttgtagctaagacgtagtcctcttccttatactctggat 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tcttaaacttcctgtgcatctttgtagctaagatgtagtcctcttccttatactctggat 440
Query: 241 ggttctttggcaaggggtagggtcaatctaacagcaaggctgtgctgttctgagttgggg 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ggttctttggcaaggggtagggtcaatctaaaagcaaggctgtgctgttctgagttgggg 500
Query: 301 gctgtgtatcctggaagctatagcctgcagccctgcacaatcacgttgcaggtcccaggc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gctgtgtatcctggaagctatagcctgcagccctgcacaaccacgttgcaggtcccaggc 560
Query: 361 agactttcacttactcagctgcagcctgatttcctgcactaagctggatggaattagtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agactttcacttactcagctgcagcctgatttcctgcactaagctggatggaattagtca 620
Query: 421 gcacactacccagccaccgcgtctggggaaagccctgctcactgtctgctaat 473
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacactacccagccaccacgtctggggaaagccctgctcactgtctgctaat 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
