BAC Information

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BAC

Clone NameMSMg01-345M24
Chromosome1 (Build37)
Map Location 179,616,769 - 179,617,203
singlet/doubletsinglet
Overlap genenone
Upstream geneCep170, Sdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770
Downstream gene1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345M24.T7 (MSMg01no345_m24.b1)MSMg01-345M24.TJ (MSMg01no345_m24.g1)
ACCAG458547AG458548
length758898
length of high quality
(start - end)		440 (56 - 495)---
definitionCHROMAT_FILE: MSMg01no345_m24.b1 PHD_FILE: MSMg01no345_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:21 2005CHROMAT_FILE: MSMg01no345_m24.g1 PHD_FILE: MSMg01no345_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCCCNNNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCG
AGAATCCGCGGAATTCCAGGTCATCTACGGCTACATAGTGAGACCCTGTC
CCAGTGCCTATAACAGTGCAAGTGTTTCTGCTAATATTGCCAGACTTTAG
AAGTCCTGTTTTATTGCGAACAACCAACCCTTTCCTATCTGCAGGGGATT
TTTGCCTTTTCACAAGTTTTTATTTTTAATTTTTATTGTACTGAATTACA
TAATAACATTTCTAGACAAGCTTATAATGTTCTTTGAACATCTGCCCCTC
ACATCCTGTCACCCTCCCCTTTGTAGTGGCCCCCCTCCTGTTAGTCCCCT
AGACAGTGTAGAGGTCTGGGAAACCCAGCATGAGGGAAGATGGCTGGAAG
TCTGTGTCACCTGTCCTCACCATTCACCCAAGGAGCTGAGGTCCCTTTGG
CTGGTGTGCTACTCTCTTTGTGTAAAGCTATTGATCTTGCTGTCAGAGGC
ACCCTAAGCTCACCTCATGTACCACGGAGACAACAGTGAATTCGGCAGTA
GAGGACCCCAAAAGATCTTCTGTGAATGGAAAAAACTCCGGGTCCCTGGA
AAGGTTTAAAGCTGGCGGAAGGGGAAAACTACCAATCGGGCCCCCTGACC
TATGAAAATGAATTTTTTTCCCTAAGGGGGTCTTCTATGGGATTTTTTTC
TCTCCCCCTAATTTATAGGAACTGGGGCTTCCCCCACCACTCACGTATAT
TAAAAAAG

NNCCGATGAATATGAATCTCNCNNCGCCCTCTCTCATACATTANCGTGAC
CTATANNANGATTCCCGNANTCACTGACTGCTCTACCTAGGGGTTTCACT
GGNGTGTGATTCTTTTGTTTAAACTTGGAATTCTGGACCTACCCCCTTCT
GAAAAGGTTAAAACAANNGCCCCNNNCCTTAAAAACTCTAAACTTGTAAA
AGTCTCTCAAACCCTTCCCTTGTNNTTTTTCCCACTTTANNCCTCTCTTA
NNTTCCCTTNCCCTTTCCCTTTTTTAAACAACCCTTTTTTTTTTTTTTTT
AAATNNNNNTNCCCCCCCNAAAAANNNNCCTTTTTTTTTTATTTTTNTTT
AANNNNNNNCCTTCTTTTNNNNCTTTTTTTTTCCTCCCNNTTNTTTCTTT
NTTTTTTTTTTCTCCTTCTTTTTTTTTTTTTTTTCCCCCCCCGCGGCGGC
CNCNNNNNCNCCCNNNCNTTTNTNTTTTTTTTCTTTTCTTTTCCNTNNTT
TCTTTTTTTCTCTNNNNNNCCTTTTTTNTNCNNCCTTNTNTTTNCTCCCT
TCCTNCCTTTTTTTTCTNTNTCCTTTTCTCTTTCCTTCNTTCTNNTTTTC
TTNCNNTTTTCCNTTTTCTCTTCCTTTTTTTTNCNCTTTCTCTTTCCCCT
CTTTCTTTTCTTCCNTNTCTCTCCCTCNTTTCTCNNNNNCTTTCCCTCTN
CCTTTCTTTTTTTCTTTNTTNTTCTTTCTTTTTCTCCTTTNTTCTTTTCT
TTCTTTCCCTTCTTCTNTCCCCTNCCTTTCCTCNTTCTTTNCTCTCCCTT
CTTNTCTTTTTCNNTCTTCCTCCTCTTCCTTNNCTTTTTCTTTTNTTCTT
CTTCTTTCNCTTTTCGTGGGGGTGCGGGGTGTGCTATATTGTATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_m24.b1 MSMg01no345_m24.b1 CHROMAT_FILE:
MSMg01no345_m24.b1 PHD_FILE: MSMg01no345_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:21 2005
         (440 letters)



>mm_chr1_179616387_179617226
          Length = 840

 Score =  772 bits (399), Expect = 0.0
 Identities = 426/435 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccaggtcatctacggctacatagtgagaccctgtcccagtgcctataacagtgca 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gaattccaggtcatctagggctacatagtgagaccctgtcccagtgcctataacagtgca 758

                                                                       
Query: 66  agtgtttctgctaatattgccagactttagaagtcctgttttattgcgaacaaccaaccc 125
           ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 757 agtgtttctgctaatattgccagactttagaagtcttgttttattgtgaacaaccaaccc 698

                                                                       
Query: 126 tttcctatctgcaggggatttttgccttttcacaagtttttatttttaatttttattgta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tttcctatctgcaggggatttttgccttttcacaagtttttatttttaatttttattgta 638

                                                                       
Query: 186 ctgaattacataataacatttctagacaagcttataatgttctttgaacatctgcccctc 245
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctgaattacataataacatttcaagacaagcttataatgttctttgaacatctgcccctc 578

                                                                       
Query: 246 acatcctgtcaccctcccctttgtagtggcccccctcctgttagtcccctagacagtgta 305
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| 
Sbjct: 577 acatcctgtcaccctcccctttgcagtgtcccccctcctgttagtcccctagacagtgtg 518

                                                                       
Query: 306 gaggtctgggaaacccagcatgagggaagatggctggaagtctgtgtcacctgtcctcac 365
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 517 gaggtctgggaaacccagcatgagggaagatggctggaagtctgtgtcacctctcctcac 458

                                                                       
Query: 366 cattcacccaaggagctgaggtccctttggctggtgtgctactctctttgtgtaaagcta 425
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 457 cattcacccaaggagctgaggtccctttggctggtgtgctactctctctgtgtaaagcta 398

                          
Query: 426 ttgatcttgctgtca 440
           |||||||||||||||
Sbjct: 397 ttgatcttgctgtca 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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