NNNAAAACNNTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATATAAGAAAGTCCACTATGGTGTGTAATGCTTG
TAATTACAGCACAAAGCAAAAAGAGAGACAGAGGCTCACTGGTCATGTAG
ACTAAACTGCATAGTGAGCTCCAGGAAACTGACAGACATTGTCTCAAAAA
AAAAAACCCAACAAACAAACAAACAAACAACAAGATGGAATTACGAGGAA
TGACATCTGAGGTTGGCCTCTGGCCTCCACATGCATGTATGTACATGTGC
TTGGGCACTCATAAACACATGAACATTCACACACACCTGGTTTTAGTCAC
CTGGTTTTAGTCCCTTTTCTCAATAGTCATACTAAATGTTAATATGATAA
ACATATGACATTGGGAAATAGATGTCCATGAGCATTATCCACAGCTTGTT
ATCATTGATTCCTACATGAAATGGTAGAGGTGTACCTTTTCTCCATCTCA
ATTGTAGTTGAATGAGAGACAGTTTGACGGACATAATGAGATGTCCACGG
GAAAATGCTTCAAATTCTAAATAGAAGGGGAATAAAGGAATTCCCCCTTG
CCTTTTTTTTTTATTCAAGGTTCTACTCCCCCGGAAATAATGGGAATGGA
AACCCCCACATCTCCTTTTCCCCCGGGGGGAAGCTTAATGTAAAAAACCC
GTTTGTGAAAATATTATCTTATAAAAGAGCTTCTTATAATGGGCTCTCTC
CCCCCAAAAAGTGGAGAGTCACTTCTGTTTGCTACGAAAA

TTAATTTACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAGGCACACTTTTAC
TAGTTAAGTAAACTAGGGACCTTTTAAGGTCAGGGAATAAGGACAATGGC
TGACGTGACTCTCACTGCGGCTGGACTAATGATGATTGATTTCTTATACC
CATTTTTGCCCTCAGCTTCCTGATATGATTTATTATGAATTGCTGATGAG
TAGATATGTATTTTGAGGATTTAAGGCATATATAACTGATTTTTATACAA
AAGTGCACATTTGTGATTCTTTTAAGATTTTTACAAGATTACTTTTAAAG
ATAAATAATAAAAATAATTACTCCTTTCTTTGTAACTGCAAATTGCTGCC
TGCTGATAAGAGAAACTGGCAGAGAAAACTCCCTTGCTTGCTCACATTTT
GTTAATCTATAATAAGTTGCTTAGTTACAAATGTATGTGGGTTCTTGGAA
ATAATTTGTTTTCTTTACCTGTACTAAGTAATGTTATTTCTTGTAAAGGT
ATTGGGTAACACACTGTTTATTTCACAATTATTCACTAGAAGATAACTTA
AAACGAAACGCATTGTAATTTTATACTGCTTGAAAGATTTTCCTGGGATA
TAAAAGCTATGGAAGAAAAACCAATTTGTGGGGGGTGAACATTGGTTCTT
TCCATCCCTCATCTTTGTCTATGCATGGTGATGACTCAGGG

Query= MSMg01no345_n20.b1 MSMg01no345_n20.b1 CHROMAT_FILE:
MSMg01no345_n20.b1 PHD_FILE: MSMg01no345_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:25 2005
         (413 letters)



>mm_chr1_125004731_125005543
          Length = 813

 Score =  741 bits (383), Expect = 0.0
 Identities = 401/409 (98%), Gaps = 4/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatataagaaagtccactatggtgtgtaatgcttgtaattacagcacaaagcaaa 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 gaattcatataagaaagtccactatggtgggtaatgcttgtaattacagcacaaagcaaa 260

                                                                       
Query: 65  aagagagacagaggctcactggtcatgtagactaaactgcatagtgagctccaggaaact 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagagacagaggctcactggtcatgtagactaaactgcatagtgagctccaggaaact 320

                                                                       
Query: 125 gacagacattgtctcaaaaaaaaaaa----cccaacaaacaaacaaacaaacaacaagat 180
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 321 gacagacattgtctcaaaaaaaaaaaaaaacccaacaaacaaacaaacaaacaacaagat 380

                                                                       
Query: 181 ggaattacgaggaatgacatctgaggttggcctctggcctccacatgcatgtatgtacat 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaattatgaggaatgacatctgaggttggcctctggcctccacatgcatgtatgtacat 440

                                                                       
Query: 241 gtgcttgggcactcataaacacatgaacattcacacacacctggttttagtcacctggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcttgggcactcataaacacatgaacattcacacacacctggttttagtcacctggtt 500

                                                                       
Query: 301 ttagtcccttttctcaatagtcatactaaatgttaatatgataaacatatgacattggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagtcccttttctcaatagtcatactaaatgttaatatgataaacatatgacattggga 560

                                                            
Query: 361 aatagatgtccatgagcattatccacagcttgttatcattgattcctac 409
           |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 aatagatgtccatgagcattgtccacagcttgttatcattgattcctac 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)