BAC Information

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BAC

Clone NameMSMg01-346E06
Chromosome1 (Build37)
Map Location 33,636,932 - 33,637,390
singlet/doubletsinglet
Overlap genePrim2
Upstream geneKhdrbs2, EG633498, LOC213711, LOC100040828, EG666108
Downstream gene1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346E06.T7 (MSMg01no346_e06.b1)MSMg01-346E06.TJ (MSMg01no346_e06.g1)
ACCAG458893AG458894
length745764
length of high quality
(start - end)
453 (38 - 490)123 (65 - 187)
definitionCHROMAT_FILE: MSMg01no346_e06.b1 PHD_FILE: MSMg01no346_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:55 2005CHROMAT_FILE: MSMg01no346_e06.g1 PHD_FILE: MSMg01no346_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
AAGAGTCTCCTCTTACTTCCTAGCCAGTATGCTTTGTGGACTGTCTGTGA
TAGCTTTGGTTTATACACCATTCCAGAAGCAGTAACTCAGTGCAGTGGAA
GGCACCAGCACTGACGGCCTCTGAAGCTCCCAGTATTTTATACACAGATT
CTGTTTGGAGGTGCTTGAAGGAACAAGAATTGCCTGTAGTCTTAGGAAAA
GTGCACATCCTCAAACCTGTCCAGAGTTGACTGTGATCAATAAAGCCATC
GGTCAGCACACTCACTCGCTGGCCAGCATCAAAGGCTTGCTGGCCACCCA
GGTAGCTGCCCCTCCTTTCAAAGCTAGATCACCACAAGGCTATCTCTCCC
TTTGCCCTACTTCTCCCCAGTCGTAACTAAACCCTGGGCTTTCCTTCTCT
TTCATGCATCATGCCATTCATAAATACAGACTTATATTAGCTGTCTGAGA
TATGAAGGGCTTGTAGTTTCCTGTCTAATCCCCATACAACAAGGGACATC
TTTCTTATCTGGGGCATTAATCAANAAAGGGAGCTGATGAAAGAAGCATT
CAATACCAAACCCCATTCGGTAAACTGGAAAATTGCTCCCGGGAAATTCC
AAAAATGAGGCGGCCGGGGTCCTAAAAATGAATTCTATTCCCAAAAAACC
GGGGGAAAAATATTTTCTTTCTTTTCTATAAGAATCCTACAAGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATAGAAGCTACTGTACTACAGTGGGAGAACTCTTAG
TGGCTGATGTGTTTAGAAGTACTGATGTGTTAAGACAAGAGCCTTCGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNCNNCCCCCNNNN
CCCCNCCCCCCCCNCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCNNNCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCNN
CCCCCCCCCTTCNCCCCNNCCCCCNNCCCNCCCCCCCCCCNCCCCCCCCC
CCCCCCCCCCCCCCNNCCCCCCCCCCCCCCCCCNNCCCCNCNCCCCCCCN
NCCCCCCCNCCCCCCNCCNNCCCCCCCCCCCCCTCTCCCCCCCCNNNCCC
CCCCTTCCCCCCCCCTCCTCTCCTCTTCCCCTCCCCCTCCTTTTTTCCCT
CCCCTTTTCTTTTCTTCTTTCCCCTTCTTCCCCCCCCTTTCTTCCCCCCC
CTTCCCTTTTCCCCCCTTCCCTCTTCCCCCTCCCTCCTTCCCTTCTTCTC
TCCCCTTTTTTTCCCCCCCCTTTCCTCCCTTCCTTTCTTTTCTTTCCCCC
TTCCCCCTCCTTTCCTTTTTCCTCTCTTCCCTCTTTCTTCCCTTCTCCTT
CCCTTTTTCCTCCCTTTCTTTTTCTTCTCTCCTTTCCCCCCCTCTTTCCC
CCTCTTCCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_e06.b1 MSMg01no346_e06.b1 CHROMAT_FILE:
MSMg01no346_e06.b1 PHD_FILE: MSMg01no346_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:55 2005
         (453 letters)



>mm_chr1_33636728_33637590
          Length = 863

 Score =  806 bits (417), Expect = 0.0
 Identities = 445/459 (96%), Gaps = 10/459 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccaagagtctcctcttacttcctagccagtatgctttgtggactgtctgtgat 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctccaagagtctcctcttacttcctagccagtatgctttgtggactgactgtgat 264

                                                                       
Query: 65  agctttggtttatacaccattccagaagcag-----taactcagtgcagtggaaggca-- 117
           |||||||||||||||| ||||||||||||||     ||||||||||||||||||||||  
Sbjct: 265 agctttggtttatacagcattccagaagcagctaactaactcagtgcagtggaaggcacc 324

                                                                       
Query: 118 --ccagcactgacggcctctgaagctcc-cagtattttatacacagattctgtttggagg 174
             |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 325 agccagcactgacggcctctgaagctccgcagtattttatacacagactctgtttggagg 384

                                                                       
Query: 175 tgcttgaaggaacaagaattgcctgtagtcttaggaaaagtgcacatcctcaaacctgtc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcttgaaggaacaagaattgcctgtagtcttaggaaaagtgcacatcctcaaacctgtc 444

                                                                       
Query: 235 cagagttgactgtgatcaataaagccatcggtcagcacactcactcgctggccagcatca 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagagttgactgtgatcaataaagccatcggtcagcacactcactcgctggccagcatca 504

                                                                       
Query: 295 aaggcttgctggccacccaggtagctgcccctcctttcaaagctagatcaccacaaggct 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggcttgctggccacccaggtagctgcccctcctttcaaagctagatcaccacaaggct 564

                                                                       
Query: 355 atctctccctttgccctacttctccccagtcgtaactaaaccctgggctttccttctctt 414
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctctccctttgccctacttctccccagtcgtaactaaaccctgggctttccttctctt 624

                                                  
Query: 415 tcatgcatcatgccattcataaatacagacttatattag 453
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcatgcatcatgccattcataaatacagacttatattag 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 863
Length adjustment: 10
Effective length of query: 443
Effective length of database: 853
Effective search space:   377879
Effective search space used:   377879
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)